Syngnathus scovelli (Gulf pipefish): 125968562
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Entry
125968562 CDS
T08785
Symbol
zcchc7
Name
(RefSeq) zinc finger CCHC domain-containing protein 7
KO
K12597
protein AIR1/2
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125968562 (zcchc7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125968562 (zcchc7)
03016 Transfer RNA biogenesis [BR:
sscv03016
]
125968562 (zcchc7)
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
125968562 (zcchc7)
Transfer RNA biogenesis [BR:
sscv03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
125968562 (zcchc7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCHC
BKRF4
AIR2-like_ZnK4
DUF8096
Motif
Other DBs
NCBI-GeneID:
125968562
NCBI-ProteinID:
XP_049575723
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Position
5:6082128..6108791
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AA seq
601 aa
AA seq
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MYCSYQDRQVLEDDLYRGDGAESEASEAISELEFHLYSQLHYSSNTLELEDGEDEPSQKI
DAADKTTETAVNVEVKTKTRPPSSSPVKLQQECNSKFEKQVKKKKGKNVPKVQRPLPKFE
EVIVIDSSSDVITISESYSTDDDDDDKGVCALKGGRVRRTLTSTLVKKAPRKKVNDPVTL
DSSSPESGSESSLSSNTDSYVVENWMILGQGNQHGDHSIELNLEGSTGSNTDFEENNDAT
WKVSDKDREAQIFNKSKTAFRRVANRYYTPKNVKSQKLPVCFLCGNPYHTSSECPSKHCN
NCGLPGHVSNSCNEKYYYLKQCHRCGMTGHFHDACPEIWRQYHITTKTGPPTRQQQDNGR
SPAYCYNCSKIGHFGHGCNQQRMFRWIHVATPFINYYDTMADIKHRQKRMKYKAEELKKN
GLVSDNSHSSTPGPKRKKQKISHANNGHLFDNQFDRTVWKHKSSPRHKFFHDRNDSEAKV
FPKRGFNKERQQGNAAKQWKPKRPVPKERPAPPKLIIDERLPFSRGGARGEKSKKKKKKY
NQASSVEFRDDGRFETTPSKSRKDKHRKRNNFRKKKDTEMYPTDENLFSIPQRKRKQKQR
V
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgtactgcagctaccaggaccggcaggtgttggaggatgatctctacaggggagatggg
gctgaatctgaggcgtcagaggccatcagtgagctggagttccacctctacagtcagctc
cactactcttccaacaccctggagttggaagatggagaggacgagcctagccaaaagatt
gatgcggctgataagactacagagacggccgttaatgtagaagttaaaaccaaaaccaga
ccaccatcatccagtcctgtcaaactgcagcaggaatgcaacagcaagtttgagaagcag
gtcaaaaagaagaagggaaaaaatgtccctaaagttcaaagaccattgccaaaatttgag
gaggttattgtcattgactcaagttctgacgttataaccatatctgaaagttactccact
gatgatgatgacgacgacaaaggagtttgcgcattgaagggaggccgtgtacgccgaacg
ctgacatccaccttggtcaaaaaggcaccccgtaaaaaggtgaatgatccagtgactttg
gattccagcagcccagaatctggttcagaatcttctctttcatccaacactgattcctat
gttgtggaaaactggatgatcctggggcaaggcaaccagcatggagaccattccattgaa
ctcaacctggaaggttctactggcagcaatacagattttgaagaaaacaacgatgccacc
tggaaggtttcggacaaggacagggaggctcaaatcttcaacaaaagtaaaacagccttt
agacgtgttgccaacagatattacacgccaaagaatgtcaaaagccaaaagttgcctgtg
tgctttctttgtggcaatccttaccacacgtccagtgagtgtcccagcaagcactgcaac
aactgcggccttccaggtcacgtgtccaattcctgcaatgagaagtattactatctcaaa
cagtgccatcgctgcggcatgacgggccacttccatgatgcatgtccagagatctggaga
cagtaccacatcacgaccaagacgggccctccaacgaggcaacagcaggacaatggccga
agccccgcctactgctacaactgttccaaaataggacactttggccatgggtgcaaccag
cagaggatgttcaggtggatacacgttgccacgcctttcatcaactattatgacaccatg
gcagatatcaaacacagacaaaagaggatgaagtacaaggctgaagaactgaagaaaaat
ggccttgtatccgacaactcccactcttccactcctggaccaaagaggaagaaacaaaaa
atcagccatgcaaacaatggccacctctttgacaatcaatttgacaggactgtttggaag
cacaaatccagccccagacataaattttttcacgacagaaatgactctgaggctaaggta
tttccaaaaagggggtttaacaaggaaagacaacaagggaatgcagccaaacagtggaaa
cccaagagaccggtgcccaaagaacgccccgcaccacccaaactcataatagatgaaagg
ttgcctttctccagagggggagccagaggggaaaaatcgaagaagaagaagaagaaatac
aaccaagcttcatcagtggagttcagggatgatggtcgttttgagacaacacctagcaag
tcaagaaaagacaaacatagaaagagaaataatttccggaaaaaaaaggacacagagatg
tatccaacagatgagaatctgtttagcataccgcaaaggaaacgcaagcaaaagcaacgt
gtatga
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