Syngnathus scovelli (Gulf pipefish): 125968635
Help
Entry
125968635 CDS
T08785
Name
(RefSeq) ATP-dependent RNA helicase DHX15
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125968635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sscv03041
]
125968635
03009 Ribosome biogenesis [BR:
sscv03009
]
125968635
Enzymes [BR:
sscv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125968635
Spliceosome [BR:
sscv03041
]
Complex A
U2 snRNP components
U2 related factors
125968635
Complex B
125968635
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
125968635
Ribosome biogenesis [BR:
sscv03009
]
Eukaryotic type
90S particles
Helicases
125968635
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
SRP54
Flavi_DEAD
AAA_25
nSTAND3
Atrophin-1
AAA_29
AAA_7
Motif
Other DBs
NCBI-GeneID:
125968635
NCBI-ProteinID:
XP_049575867
LinkDB
All DBs
Position
Unknown
AA seq
761 aa
AA seq
DB search
MSKRHRLDLGDDYSSKKRSEGRDRDSDRDRGDHSRDRDRDRDRDRDRDRERDVKSSSAPP
KSTPPIITMPQLKQMAMQQQINPFTNLPHTPRYYEILKKRLQLPVWEYKENFSDIITRHQ
SFVLVGETGSGKTTQIPQWCVDMVRSIPGPKRAVACTQPRRVAAMSVAQRVADEMDVMLG
QEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMG
VLKEVVRQRADLKVIVMSATLDAGKFQVYFDSCPLLTIPGRTHPVEIFYTPEPERDYLEA
AIRTVIQIHMCEEDEGDCLLFLTGQEEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLPP
QQQQRIFEPPPPRKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVE
SLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQL
KKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKM
VIASCEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYHAF
KQNHEANQWCYDNFVNYRSLMSADNVRQQLSRIMDRFNLPRRSTEFTSRDYYINIRRALC
TGFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIK
PEWLVKIAPQYYEMSNFPQCEAKRQLERIVAKLESKEYSQY
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaagacatcgtttggatttgggtgatgactactccagtaagaagagatccgaa
gggcgtgacagagactcagatcgagaccgtggggatcattccagagacagggacagagac
cgggaccgtgacagagaccgggaccgtgagagagatgtgaagtcttcaagtgcaccacct
aaaagcacaccgcccatcatcaccatgcctcagctgaagcagatggccatgcagcagcag
atcaatccattcaccaacctgccgcacacgcctcgctattatgagatccttaagaaaagg
ttacagcttcccgtttgggaatacaaggaaaacttcagtgacatcatcacacgccatcag
agctttgtccttgttggagagactggctccggcaagacaacacagattcctcagtggtgt
gtggacatggtaaggagcattcctggtccgaagagggctgtcgcttgtactcaaccaagg
agagtggcagccatgagcgtggcccaaagagtggcagacgaaatggacgtgatgcttgga
caggaagtgggctactccatccgatttgaagactgcagttctgccaaaacaattctaaag
tacatgacagatggtatgttgctaagagaggcgatgaatgaccctcttctggagagatac
ggagtgattatactcgacgaggcccatgaacgaacactcgccactgatattctgatggga
gtgctgaaggaggtggtgcgtcagcgagcagatctgaaggtgatagttatgagcgctact
ctggatgcagggaagttccaagtgtactttgacagttgccccctgttgacgattcccggc
cgcacgcacccggtagagatcttctacacgcctgagccggagcgagactacctcgaggct
gccattcgcacggtcatccagattcacatgtgtgaggaagacgagggcgattgtcttctc
ttcctcaccggtcaagaggaaattgatgaagcgtgcaaacgaatcaagcgtgaggttgat
gacctcgggcctgaagttggggacatcaaaattattccactgtattccacattgccacca
cagcagcagcaaaggatctttgagccgccacccccgcggaaacccaatggtgctatagga
agaaaggttgtggtatcgacaaatattgctgaaacctctctaacgattgacggcgtagtc
tttgtcatcgatcctggctttgccaaacagaaggtgtacaaccctcgcatccgagtggag
tcgctgcttgtcacagccatcagtaaggcttctgctcagcagagggcaggacgagccggc
agaacccgtccagggaaatgtttccgcctttatacagaaaaagcctacaaaacagagatg
caggataacacgtatccagaaatcctgcgttcaaatttggggtctgtggtgctgcaactc
aaaaagttgggcatcgatgacctcgtgcactttgacttcatggatccaccagctcctgag
acactgatgagagccctggagctactcaactacttggcggctctcaatgatgacggtgac
ctgactgagctgggttccatgatggcagagttccccctcgacccccagcttgccaagatg
gtcatcgcaagttgcgagttcaactgctccaatgagatcctttccatcaccgctatgttg
tcagtcccacagtgttttgttcgccccacggaggctaagaaggccgccgacgagtccaag
atgaggttcgcccacatcgacggcgaccacttgacactgctcaatgtctaccacgccttc
aagcaaaaccatgaggcgaaccagtggtgctatgacaactttgtcaactaccgctcgttg
atgtcagccgacaacgtgcggcagcagctgtccaggatcatggatcgcttcaatctgccc
cgccggagcacagagttcaccagtcgagactactacatcaatattcgcagagcgctctgc
accggcttcttcatgcaggtggctcatctggaacgaactggtcattacctcacagtcaaa
gacaaccaagtagtccaactgcacccatcaacagtcttggaccacaagcccgaatgggtg
ctctacaacgaatttgtcctcaccaccaagaactacattcgcacttgcacagacattaaa
ccagagtggctggtcaagattgccccccagtactacgaaatgagtaacttcccacaatgt
gaagctaaacgacagctggagcgaatcgttgccaaactagagagcaaagagtattcccag
tactaa
DBGET
integrated database retrieval system
