Syngnathus scovelli (Gulf pipefish): 125968647
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Entry
125968647 CDS
T08785
Symbol
rubcn
Name
(RefSeq) run domain Beclin-1-interacting and cysteine-rich domain-containing protein
KO
K19330
run domain Beclin-1 interacting and cysteine-rich containing protein
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
125968647 (rubcn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sscv04131
]
125968647 (rubcn)
Membrane trafficking [BR:
sscv04131
]
Autophagy
Other autophagy associated proteins
Others
125968647 (rubcn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RH_dom
RUBC_PIKBD
RUN
LRRFIP
CMD
Motif
Other DBs
NCBI-GeneID:
125968647
NCBI-ProteinID:
XP_049575889
LinkDB
All DBs
Position
10:8110705..8125032
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AA seq
983 aa
AA seq
DB search
MEVTSDGDAAERRRELWKLLSSLKTTVEGLLSTNNPNVWSRYGGLQRLHKDMNNILSHGL
KNEQVYYKQRDYWPFVWCVRQISPQLASHVEQFSQLEPVLSSRVQSAGESYKAERWLLHS
LQVHMLSAQLKPLLRHQGHTKKFYNEDAFLLSEPHVTAMFQCLEAVEQNNPKLLAQIDTV
GLSPLKIPPCLGLLKSQSLCVLPGIGEPWRSAESTPIKEPLNRRLTASNCSLRDVAATNT
NDNMIGVGNSLSEEILLIWYEYTTSQSSSLGPPWVCLTRPEESERGVTPPQGHASIPSIS
LSESPSPSSPQPDTGDSGDGEYDDGPEYLAIGNLGQRSRRNTQSSTHSSTHSEPSENKDL
SLQPSSLALPPLRRSSFSEGQRELGRGVRGHARSFSDTGITQKLRTEGAHRKITVIIEDP
VAETRSEDCCIKEFNPFSPPCSDISTPTSLYMESHPSQYSKTADGLFRKPSKGQSLISYL
SEQDFGSCADLEKENAHFSISESLIAAIELMKYNLRRQQEEGDEEGDSDSEIQQLKQKIR
LRRQQIRRSRLPPCTTPHHLFHSTDSSGSRRSSQDSHQGLSDSDSAEEVEECELRDGCEG
QSLLAVSQNGLSLSLASLFSEADIKRSVSTSNKSFLSSDSISTSFLQSNSAESVAMGLLR
QFEGMQLPAASELDWLVPEHDAPQKLLPIPDSLPISPDDGEHADIYKLRIRVRGNLEWAP
PRPQIIFNIHPPPKRKIIVAKQNYRCAGCGTRIDPDYIKRLRYCEYLGRYFCQCCHENAQ
VVVPSRILIKWDFSKYHVSNFARDLLSKIAGDPLFNPNDINSNLYKKVKALESVRVLRMQ
LFHMKTLFKTCRFSKEVLEQFDSLPCHLTEDLHLFSLNDLLSVRNGELAPRMKELLKLGT
VHVAGCVLCQAKGFVCEFCGNEKDIIFPFQLSKCQRCEGCHACYHRVCFRATKDCPRCQR
LAQRRVMMARRNMEQQEDEGGGT
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
atggaggtaacgtctgacggagatgcggcggaacgcaggcgggagctctggaagttgttg
tccagcctgaagaccacagtggagggcctcctgtctacaaacaaccccaatgtttggtcc
cgctatggcggcctacagcgcctgcacaaggacatgaacaatattctcagtcatggactg
aagaatgagcaggtgtattacaagcagagagactactggccgtttgtctggtgtgtacgt
caaataagccctcagcttgcctcacacgtcgaacagtttagtcagctggagccggtactg
agcagcagggtgcagagtgctggtgaaagctacaaggcagagcgctggttgcttcacagc
ttgcaggtccacatgctctcggctcagctcaaacctctgctcaggcatcagggacataca
aaaaaattctacaatgaagatgccttcttgctcagtgagccacatgtcaccgccatgttc
cagtgtctagaagctgtggaacaaaataaccccaaactgctggcccaaatagatacagtg
gggctgtccccgctcaagattccgccgtgcctcggcctcttgaagagccagagcctgtgt
gttttgcccggcattggtgagccctggagaagtgccgaatcgacacccataaaagagcct
ctaaaccggaggctcacagcatccaactgctcacttagagatgtggctgccacgaacacc
aacgacaacatgataggtgttggaaatagtttgagtgaggaaatattgttaatttggtat
gaatatactacctcacaatccagcagcctaggtcctccctgggtgtgtctgaccaggccg
gaagagagtgagcggggtgtgacgcctcctcaaggacatgcgtccataccctccatctca
ctttcagaatctccctcgccctcctccccgcagcctgacacgggagattcaggtgatggc
gaatacgacgacggtccagagtacctggccatcggtaacctgggccaacgaagtcgccgc
aacacccaaagctctacacacagctccacgcacagcgagcccagcgagaacaaggacctg
tccctgcagccaagttctctggctctacctccactcaggcgctcgtctttctcagagggc
cagcgagagctcggcagaggggttcgaggacacgcccgctcattttctgatacggggatc
actcaaaaactcaggacagaaggggcccaccggaaaatcaccgtaataattgaggatccg
gtagcagaaacgaggagcgaagactgctgcattaaggagttcaaccctttctcacctccg
tgcagtgacatcagcacgcccacttccctttacatggaatctcatccgtcccagtacagc
aagacagcagatggtttgttcaggaagccatcaaaaggccagagcctcatcagctacttg
tcagagcaggactttggcagctgtgctgaccttgaaaaggagaacgctcacttcagcatc
tctgagtcccttattgcagccatcgagctgatgaagtacaacctgcggcgtcagcaggag
gagggtgacgaggaaggagacagcgactctgagattcagcagctcaagcagaagatccgc
ttgcgaaggcagcagatccgtcgcagccgcctgcccccctgcacaacgccccaccacttg
tttcattcaactgatagcagcggttcaaggaggagctctcaggactcccatcagggccta
tccgactccgactctgcagaggaggtggaggagtgtgaattacgggatggctgtgagggt
cagtccctgctggcggtgtctcagaatggcctctccttgtcacttgcctccctcttctca
gaagcagacataaagcgcagcgtaagcaccagcaacaagtcttttctgagctcagattcc
atttccacctccttccttcaatccaactcagccgagtcggtcgccatgggtttgctccga
cagtttgagggcatgcagcttccggccgcttccgagcttgactggctggttccagaacat
gatgccccacagaaactgttgcccatcccagactcacttcccatctctcctgatgacggt
gagcatgcagacatctataagctcaggattcgggtacgagggaacttggagtgggcgccg
ccccgaccacaaattatcttcaacattcaccctccaccaaagaggaagatcattgtggcg
aaacagaattaccgctgtgctggttgtgggactcgtattgacccagattatattaagaga
ctacgttactgcgagtacctcggacgttacttctgccagtgctgccatgaaaatgcacaa
gttgtggttcccagtcgaattctgatcaagtgggacttcagcaaataccatgtgagcaac
tttgcccgtgacttgctgagcaagattgctggagacccactcttcaatccgaatgacatc
aacagcaacctttacaagaaagtcaaagctctggagtctgttagggttttgagaatgcag
ctgtttcatatgaaaactctcttcaagacatgtcgcttttcaaaagaggttctcgagcag
tttgacagtctgccctgtcacctgacggaggacctgcaccttttttccctgaatgacctt
ctgtctgtgcgcaatggagaattggccccccgaatgaaggagttacttaaactcggcact
gtgcatgtagcaggctgcgtgttgtgccaggcaaagggctttgtgtgtgagttctgtggc
aacgagaaagacatcatcttccccttccaactgagcaagtgccaacgctgcgaaggctgc
cacgcttgttaccacagagtctgcttcagagccaccaaggactgccctcgttgtcagagg
ctggcccagcgccgcgtgatgatggcacgcaggaacatggagcagcaagaggatgagggc
ggcggaacttag
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