Syngnathus scovelli (Gulf pipefish): 125968717
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Entry
125968717 CDS
T08785
Symbol
tprb
Name
(RefSeq) translocated promoter region b, nuclear basket protein isoform X1
KO
K09291
nucleoprotein TPR
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125968717 (tprb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125968717 (tprb)
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
125968717 (tprb)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_MLP1_2
TPR
Nucleoprot-TPR
ZapB_rel
Motif
Other DBs
NCBI-GeneID:
125968717
NCBI-ProteinID:
XP_049576023
LinkDB
All DBs
Position
10:1168429..1182486
Genome browser
AA seq
2350 aa
AA seq
DB search
MAALMLQDLDGSELSKLSKGTLNKLEKILSDQCYEIDTLKAQREQFRVDSEQHSFDKVKQ
LSQCQEDFLRQTQEHRNLKEELEKIENELKSAREKNLQYENAQEKSFSEQTTLSKAKEEL
ETQKLELVRTLERRSLEVEHLNGELRQLNDKLVEVNATKMSQQLRLDELDAAEVNIKYRE
KRLEQEKELLAEQTSWLNAELKSKSEELLSLSRQKGKEILELKCTLENKTDELNRVQEQV
ASLKALNENHQKQNEDLIHKLKEAKEQRTTIEEKFRNELNANIKLSNLYKGAAADSEAKG
EELGRAVNELHTLLQEAGEANKALEENLQEANAASEKTVAELKEKIQVLEKELDNANELL
SNSKLRGPLGTSVLTEAQITVSPTAAAVAKIKPGMKLTELYTAYVESQEQLQMERLENKR
VNKYLDDIVQEVEAKAPILKRQRDEHERMQKSVASLSAKLEQAVKEVHRLQNEADEANKR
SSVMERDNKRFELQLADMAQQVRVLLIELEEARGNPVLIEEELSSADVSSTSEVISQHLV
TFRSVEELQKQNQRLLVALRDLSEAQEKEELEASGSRRGEVEQSLETTLAEVESLREQRS
QHVKMTESIMRQRDLYRVLLAQATGVTFPQHGTSPEELILTSTPRRSPAATPTTGTPAAL
VSMATDTADALEAKAALRQLQEVFSSNKKERLESEKALTEQNDKLLEQLSDLRSQNAKTA
TQLEFASKRYEMLQDNVEGYRKEIASLREKEQKMASATQKHEQTINTLNEDLRAAQEKLG
MAEGLSEGLRKERDMLKLVESRLNQEKDMILSQQQSQNLLLTNLQAIQATLERSDADTRQ
RLSSQLEKQEREISQLQKRLEHEVEQRYLLSRNQEIQVMEAKRQLETQVALHQKTKEMLN
AAEMELRSLRVEQGGSEQRHILGSPSTPKTRVSNQEREDLQGRLLQAETRVEQLAESLKA
ATSSMEQYRAMAMSLEESLEKEKQVTEQACASIETRVKEAEEQHRVLEEKLLEAEKEKQN
IEEQNRKAMTSLNEQMDGLKRDLISAQAEHHMALERLSTAESQQLQALQDSQVQAKLAAE
AQDKYEQEMMLHAADVKAMQDAKAQALQAVELRHQLEESSQRISAELMESKISWAEQEKM
LKEEMSKIESRSEELQRQNTLLHEQIEAMSSKMAENLQRASSESPLNISLTEEGKSQEQV
LEILRFVRREKEIAESRFEFAQGETLRYRLRVEHLEHELKEVQDSLSAARERMQVTAKTL
AQHDELMKKTETMSILIETNKMLREEKDKLEKELQQTQDKVQKLESDVLPLKQANNELSE
KSGMLQMEKKILDEEIKRWKARTQHLVSQQKDSDPDEYKRLHTEKEAHLKRIQQLTEENS
RIKAEVIRSNNLTTSQQSQIQNLLDNLSKITDERNLLKEEVVAKSLDIQEKVKMITQVKK
LGRRYKIQYDELKVEHDKITAEAAGSNKEEEARQASVQELQVLKDSLSQAETKIKDLEGQ
LENINKVVAEREMEVHNAQEQSSRLQTELGRLRQELQDKEETLKQQMADKVEKTRKAMLF
AKQRINQLLSAKDELQKENEELKQRFEEQKQQSDELEVRVSAIKSQYEGRFNRQERELRE
LRGQQERQDQKDESSEAGPSKPQEQQRSTEQRQISLKSTPAADRGSASASDPPTANIKPT
PVVATASKQAVNPGNKPTPRASIRPMITPATVPTPTPTATVMPTTQVETQEAMQTTEGPP
VEHVTVYGSASGSVRSASPNIQTTLASPMLNVQQTQTQATAFVQPTQQQSVTHPEPVSQE
PPPVIIEATQSSQVEWPSTSSTSAVFGTVSATPGSSSSSSLSKRPREEDESSSTVVTDTE
APQEDTSRAPVPKKLRIIQRVGPEEEMMADDSAEAEGVVPTDSQEGAEASQTEELAALDE
DDESAASQSTTMHQEVALAQSETPEQQLEVIVIVTDTESEENPEEGDEEEDEQDYEEGDE
EEDDEEEVEEEEEEEDGGIGEDGEESNEESGEGNEAYEGDDAEGVDVTDPGTETEESLGA
SDSTQRPADSQTASFEATTMEAFSTEQPITSSGIRMPQSPRRPTHPLPPTQMSQRIPARR
QSAGRVPQLSGIPSSAQHLIDEDDRMVPSAPTLVVPHRSDSFDQAVHSSPQMTARTFRFG
QSDEVPQTSSDLGQLAAQGGLGMFDSPMFLTSHEEESDSYSVPTTQLQVTAPVFSDAVPS
DAAEQASQSVPMVSTSTPGILAPGTASTSEERDDVFLESDPDNSRPSAESSVDAVVSQDD
LVEPSQPSDTASLPSTSQEPSSSSADTSSAPTRAAPSRQLQRWPGSRGGRAKRGGQAFPS
RGVHGRRIAR
NT seq
7053 nt
NT seq
+upstream
nt +downstream
nt
atggcggcactcatgctgcaagacttagatggttccgagctgtctaaattgtcaaaagga
acacttaacaaacttgagaagattttatctgatcaatgctatgaaattgacactctcaaa
gcccaacgggagcaattccgagttgacagtgagcaacattcatttgacaaggtgaaacag
ctttctcaatgtcaggaggattttctgagacagacacaagagcacagaaaccttaaagag
gagttggagaaaatcgagaatgaactcaaaagtgcccgtgagaagaaccttcagtatgaa
aatgctcaagaaaagtcattttcagaacagactacgctttcaaaagccaaggaagaactg
gagacgcaaaagcttgaacttgtgcggacacttgagagaagaagcttggaggtggagcat
ttaaatggtgagttaaggcaactgaatgataagttggtggaggtcaatgccaccaaaatg
tctcagcagctgagattagatgaactggacgcagccgaagtcaacattaaatacagagag
aagcgtctggaacaagaaaaagagctgctggctgaacaaacatcttggctgaatgcagag
ttgaagtccaagagtgaagaacttttgagcctatctcgacagaagggtaaagaaatcctg
gaactgaaatgcactctggagaataaaacggatgagttgaacagagttcaggaacaagtg
gccagtcttaaagcattgaatgaaaaccaccaaaaacagaatgaggacttaatccacaaa
ctgaaagaagccaaggagcagcggaccactatagaggaaaagttcagaaatgagctgaat
gccaacattaagctctctaatttatacaagggagcagcagctgattctgaggccaaaggt
gaagaactaggtcgcgctgtaaatgagttgcatactctgctgcaagaggcaggggaagcc
aacaaagctcttgaggagaatttgcaagaggccaatgctgcttcggaaaagactgttgct
gagctcaaggagaagatccaagtgcttgaaaaggaactggacaacgccaatgagctcctt
tctaactcgaaactaagaggtccacttggcacatctgtgctcactgaggcgcaaataaca
gtgtctccgacagccgctgctgtggcaaagattaaacctggaatgaagctcactgagttg
tacactgcctatgtagaaagccaggagcagctgcagatggagcgcctggagaacaagcgg
gtcaacaaatatctcgatgacatcgtgcaagaagtggaagcaaaggctcccattctgaaa
cggcaaagggatgagcatgagcgcatgcagaaatcagtggccagtctctcagccaagctg
gaacaggctgtcaaggaggtgcaccgcctgcaaaatgaagctgatgaagccaacaagcgt
tcctctgttatggaaagggacaataaaaggtttgaactgcagcttgcagacatggctcag
caggtgcgtgtcctccttattgagctggaggaggccagaggaaaccccgtgttaattgag
gaggagttgagctctgcggatgtcagcagtacctcagaagtcattagtcaacacttggtg
accttccgcagcgtggaagagctacagaagcagaatcagcgtcttctggtggccctcagg
gatctcagtgaagcccaagagaaagaagagttggaagcctctggctccaggcgcggtgaa
gtggagcagagtttggagaccactctggctgaggtggagtctctgagagagcaacgcagc
cagcacgtcaagatgaccgagtccatcatgaggcaaagagacctgtatcgagtgctgttg
gctcaggcaacgggagtgaccttccctcagcatggtacctcaccggaggaactcatcctc
acatccaccccacgccgttcacctgcagccacgcccaccaccgggactcccgctgcactc
gtctccatggcaactgatactgccgacgcattggaggccaaggcagccttgcgacagttg
caggaggtgttttcctccaataaaaaggaacgactggagagtgagaaggcactgaccgag
cagaatgacaaactcctggagcagctctcagatcttcgctcccagaatgccaagacggca
acgcagttggaatttgcctccaagaggtatgagatgttgcaggacaatgtcgagggctac
aggaaagagatcgcttccctccgagagaaggaacagaaaatggcctccgctacacagaag
catgagcagaccatcaacacattaaatgaggacctgcgagctgcacaggaaaaacttgga
atggcagagggtctctctgagggtctgcgtaaagagagagacatgttgaagctagttgag
tctaggttgaatcaagagaaggatatgatcctaagccaacaacagagtcagaaccttttg
ttgaccaaccttcaggctattcaggctacactcgagcgctcagatgctgacacgcgtcag
cggcttagcagccagctagagaagcaagagcgagagatctctcagctacagaagaggttg
gagcatgaagtggaacagcgctatttgctcagcagaaaccaagagatccaagtcatggaa
gcaaagcggcaactggaaacgcaagtggctttacaccagaagacgaaagagatgctgaat
gctgccgagatggaactccgctccctcagggtggagcaaggtggcagcgaacaacgtcac
atcctgggctccccctccacgccaaaaactagagtttcaaatcaagagcgggaggatctt
cagggtcgcttgctgcaggcagaaacacgggtagagcagttggcagagagccttaaagca
gccacttccagcatggagcaataccgagccatggctatgagtctggaggaatctctggaa
aaagagaaacaggtcacggagcaggcttgtgcctccattgaaactcgtgtgaaggaggct
gaggagcagcaccgcgttcttgaggagaagcttctggaggctgagaaagagaaacagaat
atagaagaacaaaataggaaggcaatgacctccctgaacgagcagatggatgggcttaaa
agggatctgatcagcgcccaggcagaacaccacatggcactagagcgtttgtcaactgct
gaatcccagcagctgcaggctttacaagacagccaagtgcaggctaaactggcagccgaa
gcacaagataagtatgagcaggagatgatgctgcatgctgcggatgtgaaggctatgcag
gatgccaaggctcaggccctgcaagcagtcgagctcagacatcagctcgaagagagttct
caaagaatcagcgccgagctcatggagtccaagatatcctgggcggagcaggaaaagatg
ctcaaggaggagatgtccaagatagaaagccgctctgaagagttgcagaggcagaacact
ctcttgcatgaacagattgaggcaatgagtagcaaaatggcagagaatttgcagcgtgct
tcaagtgagagtccacttaacatctctctgactgaggaaggcaaatctcaagaacaagtc
cttgagattctaaggtttgtgcgtcgtgaaaaggagattgcagagtctcgttttgagttt
gctcaaggggagactttgcgttaccgcctaagggttgaacatctggaacacgaactaaaa
gaggttcaagacagcttgagtgctgctcgtgagaggatgcaggtgacagcaaagaccctg
gcccagcatgatgagctgatgaaaaagactgaaaccatgagcattctgatagagacaaac
aagatgctgcgagaggagaaggacaaattggagaaagaactacagcagacccaagataag
gtgcaaaaactggagtcggatgttttgccactgaaacaggcaaacaatgagctgagtgag
aagagcggaatgctacaaatggagaaaaaaatactcgacgaagaaatcaagcgctggaag
gctcggacgcagcatttggtgagtcaacagaaagattccgatccagatgaatacaagcgt
ctccatacagagaaggaagcgcaccttaaacgtattcagcagctcactgaagagaacagc
agaatcaaagcagaggttatcaggtccaacaatctcaccacatcccagcaaagccaaatc
caaaacttgcttgataatttgagcaagataactgatgagagaaatttgctgaaagaagag
gttgttgccaaaagtcttgacatccaggagaaggtgaagatgattacccaggtcaaaaag
cttggacgccgctacaagattcagtatgatgagctcaaggtagaacatgacaagattaca
gctgaagctgcaggctcaaacaaagaagaagaggcacgtcaagcctcggttcaggaactg
caggtacttaaagattctcttagccaagctgaaaccaagattaaagacttggagggacag
ctggagaacattaacaaggtggttgcagagcgtgaaatggaggtacacaatgctcaggaa
caatcttccaggcttcagacagagctgggcaggctaaggcaagagctgcaggacaaagag
gagacactcaaacagcaaatggcagacaaagtggaaaagaccaggaaggccatgcttttt
gccaagcaaagaatcaaccagctcctgagcgctaaagatgagctgcagaaagaaaatgag
gagctaaagcagcgatttgaggagcagaagcagcaaagtgacgagttagaggtgcgcgta
agcgctatcaaatctcagtacgagggacgctttaaccgacaagagagagagctgagagaa
ctgcgaggtcagcaagagagacaagaccaaaaagatgagtcttctgaggcaggtccaagc
aaacctcaggagcagcagaggagcacagaacagcgacagatcagtcttaagtctacgcca
gctgcagacaggggcagtgccagtgcctctgacccgccaactgccaacataaagccaaca
cctgtagtggccacggctagcaagcaggctgtcaacccagggaacaaacccactccaagg
gcaagcatcaggcccatgatcaccccagccacggtgcccactccaacacccaccgctacg
gtcatgcccacaacgcaggtcgagacccaggaagccatgcagaccacagaaggtccgccg
gtggagcacgtgactgtgtacgggagtgccagtggttctgtgcgctcggcgagccccaac
atccagaccaccttggccagccccatgctgaatgtgcaacaaacccagacacaagccaca
gcttttgtgcagccaacgcaacagcaaagcgtcacccatcccgagccagtcagtcaggag
ccgccgcctgtgatcattgaggcaacgcagagctcgcaggtggaatggccttcaacatcc
tccacctctgctgtcttcggaaccgtttcagccacaccaggatcttcttcttcctcctcg
ttgtccaaaagaccccgtgaagaagatgaaagtagcagcacagttgtcacagatactgaa
gcccctcaggaggacacctccagggctcctgtacccaagaagctgcgcattatccagaga
gtgggtcccgaggaggaaatgatggctgatgacagcgctgaagctgagggagtggtgccg
acagacagtcaagaaggtgcagaagccagtcagactgaagagcttgcggctctggatgaa
gatgatgagagtgcagcctctcagtctaccaccatgcaccaagaagttgctcttgcacag
agtgaaactcctgagcagcagctcgaagtcatcgtcatcgtaaccgatacggagagtgag
gaaaaccctgaagaaggggatgaagaggaggatgagcaggactacgaagagggcgatgag
gaggaagatgacgaggaggaggtggaggaagaagaggaggaagaagacggggggatcggc
gaagacggagaggagagtaacgaggagagcggagaaggcaatgaagcctacgaaggagat
gacgcagagggagttgacgtaaccgacccagggacagagacggaggagagtttgggggcg
tccgactccacccagaggccagcagattcccagacggcaagctttgaggccaccacaatg
gaggccttctctaccgaacaacccatcacaagctccggtatacgtatgccccagtcgcca
aggagaccaacacatccacttccccccacccagatgtcccagcgcatccctgctcgtcgc
cagtcggctggcagggtccctcagctctctgggatccccagcagtgctcagcacctcatt
gacgaagacgacaggatggtaccgagcgcgcccacactggtggtgccgcaccgctcggac
agttttgaccaggctgtccacagctctccccaaatgactgcaaggaccttccgtttcggc
caatcggacgaagtgccgcagaccagctcagatctcggccagcttgcagcccaaggaggt
cttgggatgtttgacagccccatgttcctcacatctcacgaggaggagtctgacagctat
agcgtgcccaccacacagcttcaagtgacagccccagtcttctctgacgccgttccgtca
gatgcagcagagcaggcctctcagtcggttcccatggtgagcacgtccactcccggcata
cttgcaccaggcaccgccagtacaagcgaggaacgagacgacgtcttccttgagtccgac
cccgataattccaggcccagtgccgagagttcggtggacgctgtggtatctcaggatgat
ttggtggaacccagtcagccttccgacacagccagcctgccgtccaccagccaggagcct
tcgtccagctctgcagatacgagcagcgctccgaccagggctgcaccaagcagacagctg
caacgttggccagggagccgaggtgggcgcgccaagagaggaggtcaagcgtttccttcc
cgaggagtccatggcagacgcattgccaggtga
DBGET
integrated database retrieval system
