Syngnathus scovelli (Gulf pipefish): 125968728
Help
Entry
125968728 CDS
T08785
Name
(RefSeq) ATP-dependent RNA helicase DDX39A
KO
K13182
ATP-dependent RNA helicase DDX39 [EC:
5.6.2.7
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sscv03041
]
125968728
Enzymes [BR:
sscv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125968728
Spliceosome [BR:
sscv03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
125968728
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
125968728
NCBI-ProteinID:
XP_049576040
LinkDB
All DBs
Position
5:4174332..4177558
Genome browser
AA seq
427 aa
AA seq
DB search
MSEHDVDHELLDYEEEEEPQGTLESTTPANKKAVKGSYVSIHSSGFRDFLLKPELLRAII
DCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCH
TRELAFQISKEYERFSKYMSNVKVSVFFGGMAIKKDEDVLRQRCPHIVVGTPGRTLALIR
NKTLSVKNIKHFVLDECDKLLEQLDMRHDIQEIFRLTPHEKQVMMFSATLSKEIRPVCRK
FMQDPMEVFVDDETKLTLHGLQQYYCKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVHRCV
ALSQLLVEQNFPAIAIHGGMGQEQRLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFN
YDMPEDSDSYLHRVARAGRFGTKGLAISFVSDETDAKTLNEVQDRFEVNVAELPEEIDIS
TYIEQSR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaacatgatgttgatcatgaacttttggactacgaagaagaagaggagccccaa
ggaaccctggagagtacgaccccggcaaacaaaaaggccgtgaaggggtcgtacgtatcc
atccacagctccgggttccgagatttccttctcaagcctgagctcctccgtgccatcatt
gattgtggttttgagcatccatctgaagtccagcacgagtgcatccctcaagccatcctg
ggcatggacattctctgtcaagccaagtctggcatgggaaagacagctgtgtttgtgctt
gccaccctgcagcagattgaacctgtggatggtcaagtgtccgtcctggtcatgtgccac
acccgagagctggctttccagatcagcaaagagtacgagcgcttctccaagtacatgtcc
aacgtcaaagtgtctgtcttctttggcggcatggccatcaagaaggacgaggatgttctg
cggcagagatgcccgcacatcgtggtgggcacacccggacgcaccctggctctcatccgc
aacaagaccctcagcgtgaagaacatcaagcactttgtgctcgacgagtgcgacaagttg
ctggagcagcttgacatgagacatgacatccaggagatcttccggctgacgccccacgag
aagcaagtcatgatgttcagcgctacgctcagcaaggagatccgcccggtttgccgcaag
ttcatgcaggatccaatggaggtgtttgtggacgacgagaccaagctgacccttcacggt
ctgcagcagtactactgcaagctgaaagacagcgagaagaaccgaaagctctttgacctg
ctggatgtgctcgagtttaaccaggtggtgatatttgtgaagtcggtgcatcgctgcgtg
gccctgtcccagctgctggtggagcagaacttcccagccatcgccattcatggcggcatg
ggtcaggagcagaggttatctcgataccagcagtttaaagactttcagcggcggatcctg
gtggccaccaacctgttcggccgaggcatggacatcgagcgagtcaacatcgtcttcaac
tacgacatgccagaggattctgactcgtacctgcacagagtggcccgcgccggcaggttc
ggtaccaaaggcctggccatcagttttgtctccgacgagactgacgccaagaccctgaac
gaggtccaagatcgctttgaggtcaatgtggccgagttgccagaggagattgatatctcc
acttacattgaacagtccagatga
DBGET
integrated database retrieval system
