Syngnathus scovelli (Gulf pipefish): 125968950
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Entry
125968950 CDS
T08785
Name
(RefSeq) protocadherin-18a isoform X1
KO
K16499
protocadherin delta 2
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sscv04515
]
125968950
Cell adhesion molecules [BR:
sscv04515
]
Cadherins
Protocadherins
125968950
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
PepSY
Cadherin_C_2
Calici_coat_C
TMEM154
BAMBI_C
Ly49
Motif
Other DBs
NCBI-GeneID:
125968950
NCBI-ProteinID:
XP_049576485
LinkDB
All DBs
Position
Unknown
AA seq
1181 aa
AA seq
DB search
MTGLFQLRMWGFFIVLVLLTLHASGKTLRYQIYEEQKVGTVIARLKDDVADVLAKLPSSV
SLRFRAMQRGSSSFLTVREQDGEISIKSRIDREKLCEKNLNCSIQFDVLTLPTEHLQLFH
VEVEVLDINDNAPQFARAIIPIEISESASVGARIPLDSATDPDVGENSLYSYALEPNHFF
NIDVQSRTDGAKYAELVVLRELDREVRSSYELQYTAFDRGVLSRTGTTLLKINVADSNDN
SPIFDKSSYVINLSENAPVGTLLIDLNATDADDGTNAKIIYSFSSHVSPKIMETFKINPD
SGHLTLIARVDYETTNSYDIDVQAQDMGPNSMPAHCKILVKVVDVNDNKPDISINIMSSQ
GNGDAAYISEAAPLDTFVALVRVEDLDAGLNGEVECKLHGQGYFKLQKTYENNYMILTNV
SLDREKRSEFSLTVVAEDRGTPSLSTVKHFTVHVTDENDNPPHFEKGQIEIFKAENNAPG
AYLTSILATDPDLDVNGQVIYSILESSIHGNSISTYVTIDPSNGAIYALRTFDREDVSRI
SFIVQAKDAGTPPLLSNATIVLNILDENDNPPVIVVPQLWNFSADVPVSKFTEAGHLVTV
VKATDRDMGINSELVCSIVSGNEEGFFNIDPRTCEIRANASLENFPHEHAEITVVVRDHG
SESLSAKAVLRINLYENIENHVQEMDQGESPLDASLIIIISLGAICAVLLVIMVVFAAHC
NREKKETRQSYNCRVAESTHQHHPRKPSRQIHKGDITLVPTVNGTLPIRSHHRSPSDTPP
LDRAQMGTRQSHHSHQSLNSLVTISSNHIPESFALELAHTTPQVEQVSQLLSMLHQGQYQ
PRPSFRGNKYSRSYRYALQDMDKFSLKDSGRGDSEAGDSDCEMGRESPVDRLLLGEGFSD
LIHLEMHHRLHPAMRLCTDECRVLGHSDQCWMPPVSSPASSSDYRNNMYIPGEESSQQPQ
TDDDQSSEESDQLKSFSTFGKEPGSEEEGPARVAAGGGSEGCTPAGGAGSLLTEMNSVFQ
RLLPPNMDSYSECTEPSPTSSSSTGEKGSGRSGNISGNHSNIAVPQDSRRGLLPGGKGPA
YPPGVATWAANTHYLNPGNGSVGNNHVSPAPPSSSTSSNGQPPHLKWLPAMEEIPENYEE
DEFDGVFYQGGKRGENRQETGMDASELVHEINKLLQDVRQT
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgacgggacttttccagctaagaatgtggggtttcttcatcgttttagtgctgttaacg
cttcacgcatctggtaagacactacgatatcagatttacgaggaacagaaggttggcaca
gttattgctcgtttaaaagatgatgtcgcggatgttctggctaaacttccaagctcagtg
tcgctgcgcttccgagcaatgcaaagagggagttcctcgtttctcactgtgcgcgagcag
gacggagaaataagcatcaaatccagaattgatagagaaaaactttgtgaaaagaatctc
aactgctcgatccaattcgacgtgctcacgttgcctacggaacatctgcaactgtttcac
gtcgaggtggaagttttggacatcaacgacaacgcgccacagtttgcccgcgccataatc
ccgattgaaatatccgagagcgcgtctgtcggagcgcgcatccccctggacagcgccacg
gatccagacgtgggcgaaaactccctgtacagctatgccttagagcccaaccattttttt
aatattgatgtacagtccagaaccgatggggcaaaatatgctgaactggtggtactccga
gaactggatcgggaggtacgctccagttatgaacttcagtacacggcttttgataggggg
gttctatcccgaacaggaaccaccctgcttaagatcaatgtcgcagattcaaatgacaac
agcccgatctttgacaagtcctcatacgtgatcaatctttctgaaaatgcacctgttgga
acactgttaattgatttgaacgccactgacgctgatgatgggacaaacgccaaaataatc
tattcattcagcagtcacgtgtcccccaaaatcatggagacgttcaaaatcaaccctgat
agtggtcacctgaccctcattgctcgtgtagactatgaaactaccaattcctatgatatt
gatgtgcaagcacaggatatgggtccaaactccatgccagcccactgcaagatcctggtc
aaggtggttgatgtaaacgacaataaaccagacattagcattaatatcatgtcctcacag
gggaacggagatgcagcttatatatcagaagctgctccactggacacatttgtggcttta
gtgagggtagaggacctagacgctggtcttaatggagaggtggagtgtaagcttcatggt
caaggttatttcaaactacagaaaacatacgaaaacaactacatgattctgactaatgtg
tctctggaccgagagaaaaggtcagagttcagtctgacagtggtggcagaggaccgaggg
actcctagcctctccacagtcaaacacttcactgtgcatgtaaccgatgaaaatgacaac
ccaccgcattttgagaaggggcagattgagatctttaaagcagagaacaatgctccgggg
gcatatttgacctccatcctggcaacagatccagatctggatgtcaatggacaagtgatt
tattccatcctggagagctcaattcatgggaactccatttccacatatgtcaccatcgac
ccttctaacggtgcaatctatgccctgcgtacattcgacagggaggatgtgagccgcatc
tcctttattgtgcaggccaaagatgctggaacgccaccactgctcagcaatgccaccatt
gttctcaacatcctagatgaaaatgacaacccccctgtgattgtggtccctcagctgtgg
aactttagtgctgatgtaccagtgtcaaagttcactgaagctggacatcttgtaactgtt
gtcaaggcaacggaccgtgatatggggataaactctgagcttgtttgctccatcgtcagt
ggcaatgaagagggtttcttcaatattgatccaagaacatgtgaaattcgcgccaatgcc
agtctggagaacttccctcatgagcatgctgagataactgttgtggtgagagatcatgga
agtgagagcctgagtgccaaagcagttctcaggataaacctctatgagaatatagagaac
catgtccaagagatggaccaaggggaatctccacttgatgcatcactgattatcatcatc
tccctgggggccatctgcgccgtgctgctggtaatcatggtagtgtttgccgctcactgc
aacagagagaagaaggagacaaggcaatcttataactgtcgggtcgctgaatcaacccac
cagcaccaccccaggaagccctcacggcagatccacaaaggagacatcacccttgttccc
actgtgaacggtaccctaccaatcagatcccatcaccgctcgccttcagatacaccacca
ttggaccgagcccagatggggaccaggcagtctcaccacagtcaccaatcccttaacagc
ctagtgacaatttcgtccaatcacattccagagagttttgccctggagctggcgcataca
actccacaggtggagcaagtctcacagcttctgtccatgctccatcagggccagtaccaa
cccagacccagtttccgtgggaacaaatactctcgcagctacaggtatgcattacaagac
atggacaagttcagcctaaaggacagtggacgtggggacagcgaggcgggggacagtgat
tgtgaaatggggagagaatcccccgtggacaggctgctgctgggggaaggattttctgac
ctgatacatctcgaaatgcaccaccgccttcatccagcaatgagactgtgcacggatgaa
tgccgggtactgggacactctgaccagtgctggatgcctccagtctcctcacccgcgtcc
tcgtcagactaccgcaacaacatgtacatcccaggggaagagtcttcccagcaaccccaa
actgatgatgaccagtcctcggaagagtcagatcaactcaagagtttttccacttttggt
aaggagcctggaagtgaggaggaagggccagcgagagttgccgctggaggaggaagtgaa
gggtgtacaccagcaggaggcgctggctcactactcacggaaatgaacagtgtcttccag
cggctcctacctcctaatatggactcatatagtgagtgcactgaaccaagcccaacttca
tcatcctcaactggcgagaaaggaagtggacgaagtggcaacatttccggtaaccatagc
aacattgctgttccccaggacagccgtagaggcttgttaccaggtgggaagggtcctgct
taccccccaggtgtggccacatgggcagccaatacccactatctaaatccaggaaatgga
tctgtggggaacaaccacgtatccccagcccctccctcatcctccacctccagtaacgga
cagccaccacacctcaaatggctccctgctatggaagaaattccagagaactatgaggaa
gatgaatttgatggtgtgttctaccagggtggcaaacgtggcgagaaccgccaggagaca
ggcatggatgctagcgagctggtccatgaaataaacaaactactgcaggatgttaggcag
acctag
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integrated database retrieval system
