Syngnathus scovelli (Gulf pipefish): 125968981
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Entry
125968981 CDS
T08785
Name
(RefSeq) E3 ubiquitin-protein ligase RBBP6
KO
K10624
E3 ubiquitin-protein ligase RBBP6 [EC:
2.3.2.27
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sscv04121
]
125968981
Enzymes [BR:
sscv01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125968981
Ubiquitin system [BR:
sscv04121
]
Ubiquitin ligases (E3)
U-box type E3
125968981
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DWNN
zf-CCHC_2
U-box
zf-CCHC
zf-C3HC4_3
zf-C3HC4_2
zf-C3HC4_4
zf-RING_UBOX
zf-RING_5
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
125968981
NCBI-ProteinID:
XP_049576542
LinkDB
All DBs
Position
5:complement(242896..253502)
Genome browser
AA seq
1894 aa
AA seq
DB search
MSCVHYKFSSKLDYNTVTFDGLHITLNELKRQIMSRERLKATDCDLQITNAQTREEYTDD
EAHIPKHSSVIVRRTPIGGVKPAGRTFIVDRSDTSAAGSSRPTDSSPSMSLAQLTKTANL
VDANASEEDKIKAMMTQSNHEYDPIHYSKKAVGPPPAHYLCFRCGKTGHYIRQCPLLLVQ
DKSMEGPKQVRTSKGIPQSFMVKAEPGAKGAMLTSTGEYAIPAIDAEAYAQGKKERPPFV
AHERSSSEDDSDPIPDELLCPICNDLMTDAVVIPCCGNSYCDECIRTTLLDSDEHVCFTC
KQSDVSPDNLIANKFLRQAVNNFKNETGYTKRGRKQIQPSAPPPPRPHLLNRPLPSRQRD
PLIANISHPPQASATVRRPQTPLLPAPTPSPPPRADVSEERKAASPVGPPVAGRASPRVS
GSQDEPPPPGEAEPPPPLPSLPLVKPSLTKSTESRSQAYNLPLLGAAPSSRPPPHLSGPH
SRPQQPHRDRGGRHWERSYRSRGEPPSGHLPTAQLPLAAPPLYVSPSLYPPPPQPYPPLY
SAAPGLLPPPPPMGYQPQPVYGPPGVNPPWGAPGGQPPLLPLPSALTQPPLSKEDFYRQR
HHRQDNITSKLDEFTKDFHKELMKYRNAPKRQRPSYSRSRSYSRSPFSRSYTRSRSRSRS
RSYSYTPSRSRSRSRSHGRAYPRSPYSRRNGRSYGRSRSRSRSRSRSYGFRRSGSPPSFR
TAAWEGAEGAPPFRSRSHSRSPGAFRNRSPAGRKVPPRGDLAAAAAAAPPYELKPLSPGT
HEHWERDSYRQWEREYREWYNKYYKDYENQHQPIYHRGRSSRERDRDRERDRERERDRVR
ERERVRVSPLHREYSPQGGRTRRGRDDKVAPAHNPPSSSSTTKSGGGGKLLKTKKVKKRK
AGEDGEQSHNSVDRGDATPVRDEPMDDILSPNKTPPVSSKPASSAAGSKAPTGSKSAVAA
ATSKPSLKSAAKSDKAKKEKGAQKIKTKAKTDASKVKSDKVKKKTSDGVMSKKKEASSAT
PAAPAAAPAPAAAPKTSKTTKAKPEESHNSSVLPKKEKSKVVSVRPPLLKTPPLFSQGLP
LPHPALHPNDNRGRRDPPSHGGGGLIPLPHQALPYLHRPPPRLGEEGRSLLGSPPGKLRR
LDGAGIGAEVFSHPHDAHQSGLQRFSHPADRPGLLPVLVGREIVWADKDRGAIRPLMDLP
VKPVTQRSVPLNLGKKDNPAVSDRPSAGTEKTAADPDAEKPAEGPDVKERLSSSDGALSR
EKAGGDKPSLSDKDSDRSSGVDRERDSNSRMDRERERGSERGREKGSRSEREREKATASD
RDQEKASGSDRDREKASGSDRDREKASGSDRDRERGSDRDREREKASDREREKAPDRDRA
KAFDRDREKASDRDRAKASSSDRDRAKASSSDRDRAKASSSDRDRVKAASSDRDRAKAAN
SDRDRAKAASSDRSDRDRAKASDRDREKASGSDRDREKASGSERDRTLASEKERDKASGS
SSKKVSAVKEAGEKSQKTERKNSASAGSSAGGRAVCLDKMTIAEKSAIGKKQGHDQEKTA
PSSADKAARSDRSASKERTAKSAAAATAGRKADAAPKDGKEGETKTVRTKPRISRKVLST
SQPARSAQEPKLDSEQKEGEKKSDSVATLEQVTPAGPQSAGEQQLLVQAPPRSKWEREDD
EEEEEGRAAPTVVAPQVTPKEPSPVPHKTELLQTDKKVALKEEKKRTPKDESKGGKVKPA
REERERKAAAAGQRTPKAEGREAKEEKNPSGPEPKRQRLCSDLARETDEAAFVPDYSEGD
DASDSSPSGDRSDSPSSSAAGGDKKKKKKHKKHKKHKKHKKHKVADKDKDKEGGEHKQKH
KKKKHKKSKDKDAEEGHAEQERPKSPAGTDSVKA
NT seq
5685 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtgtgttcactacaagttctcctccaaactggactacaacacggtcacgttcgac
gggctgcacatcaccctaaatgagctgaagcggcagatcatgtccagggagcgcctcaag
gccacagactgcgacctgcagatcaccaacgcgcagacgcgagaagaatacacggacgac
gaagcgcacatccccaagcattcgtcggtgattgtccgcagaacgccgattggcggcgtc
aaacccgctggcaggacgttcatagtagatcgttctgacacgtctgcggcgggatcgtca
agacccaccgactcgtcaccgtctatgtcgctcgcgcagctcaccaagacggccaacctg
gttgacgccaacgcatccgaggaggacaagattaaagccatgatgacgcagtccaaccac
gaatacgaccctattcattactccaagaaggccgtcggacctccgccggctcactacctc
tgtttccggtgtggaaagacgggtcactatattcggcagtgccccttgctcctggtccag
gataagagcatggagggtcccaagcaggtgcgaaccagcaaggggattccccagagcttc
atggtgaaggccgagcccggcgccaaaggagccatgctgaccagcacgggcgaatacgcc
ataccggccatcgacgcggaggcgtacgcgcagggcaagaaggagcgtccgccgtttgtc
gcgcacgagcgctcctcctccgaggacgattcggaccccatcccggacgagctgctgtgt
cccatctgcaatgatctgatgacggacgccgtggtcatcccttgctgcgggaacagctac
tgtgacgaatgtatccgcacgaccttgctggactctgacgagcacgtctgcttcacgtgc
aaacaatcggacgtttcgcccgacaacctcattgccaacaagttccttcgacaggcggtg
aacaacttcaagaacgagacgggctacaccaaacgcgggcgcaagcaaatccagccctcg
gcccctcctcccccgcgtcctcacctcctcaacaggcctctcccgtccaggcagcgggac
cctctgatcgccaacatctcccacccgccgcaggcgagcgcgacagtccgtcggcctcag
acgccgctgcttcccgcccctacgccttcgccgcctccccgagccgacgtgagcgaggaa
aggaaagccgcctcgccggttgggccgcccgtcgcgggccgcgcttctcctcgtgtctct
gggagccaggacgagccgccgccgccaggcgaggcagagccgccgccgccgctgccgtcc
ctgcctctcgtgaagcccagcctgaccaaaagcacagagagcaggtcacaggcttacaac
ttgcctctcctgggtgcggcgccatcctccaggccgccacctcatctttcaggcccacat
tcccgcccccagcagcctcacagggaccgaggcggaagacactgggaaaggtcgtacaga
agcagaggggagcccccgtcgggccacctcccgacggcccaactccctctggcggccccg
cccctctacgtgtcgccctccctgtacccgcccccgccgcagccctacccgcctctgtac
tcggccgctcccggcctcctcccgccgccgccgcccatgggctaccagcctcagcccgtg
tacgggccgccgggggtcaaccctccctggggagcccccggcggccagccccctctgctc
cccctgccctccgccctcactcagccgcctctctccaaagaagatttctacagacagcgc
caccaccgacaagacaacattacgtctaagctggatgagttcacaaaggacttccacaaa
gagctgatgaagtaccgaaacgcaccaaagaggcagagaccttcgtattccaggtcccga
tcgtacagtcgctctccgttcagccgctcttacactcgctctcgctccaggtccagatcg
aggtcttactcgtacacgccgagccgatcccgctcgcgttcgcgctcccacggccgagcg
tatccccgctcgccttactcccgacgcaacggacgcagctacggacgctctcgttccaga
tccaggtctcgctccaggtcctacgggttccggcgctccggttcgccgccctcgttccgc
accgccgcttgggagggagcggaaggcgcgccgcccttccgctccaggtctcactcgcgc
tctccgggcgctttccgcaaccgcagccccgctggtcgaaaagtaccgccgcggggcgac
ttggcggcggcagcggcggcggcgccgccttatgagctgaagcctctcagccccggcact
cacgaacactgggagcgggatagctaccggcagtgggagcgcgagtaccgagaatggtac
aacaaatattataaagattacgagaaccaacaccagcccatctatcacaggggccgcagt
agcagggaaagggatcgggatcgagaaagggatagggaaagggagcgcgatagggtgcgg
gaaagggagcgagtgcgagtgtccccgctccatcgggagtactccccccaaggcggcaga
accagaagaggtcgagatgacaaagttgcgcccgctcacaatccgccgtcctcgtcgtca
acgacaaagagcggtggcggcggcaagctcctcaagaccaagaaagtcaaaaagaggaaa
gccggagaggacggcgagcaatcgcacaattctgtggacaggggtgacgccacgcctgtc
agagacgaacccatggatgacatcctgtcgccaaacaagacgccccccgtctcttccaag
cccgcgtcgtccgcggccggctccaaggctccgaccggctcaaagagcgccgtcgccgcg
gcaacctccaagccctcactcaagtcggcggccaagagcgacaaggccaagaaggagaag
ggggctcagaagataaagaccaaagccaagacggatgcttccaaagtcaaaagcgacaaa
gtcaagaagaagaccagcgatggtgtgatgagcaaaaagaaagaggcctcatccgcaaca
ccggctgctcctgccgccgctcctgctcctgctgcagccccaaaaacatcaaagaccacc
aaagccaaacccgaagagtcccacaactccagcgtgctgcctaaaaaggaaaagtccaaa
gttgtttctgtaagaccgccgctcttaaagacacccccactcttctcccaaggcctgcct
ctgccgcatccggctctccaccctaacgacaaccgagggcgaagagaccccccctcgcac
ggcggtggcgggctcatccccctgcctcaccaagccctcccctacctccaccgccctccc
ccacgcttgggtgaggagggccgctccctactcgggtctccgcctggaaaactccgcaga
ctggatggagccgggatcggagcggaggtcttctcgcacccgcacgacgctcatcagtcg
ggactacagaggttctcgcacccggccgacagacccgggcttcttcccgtgctggtgggc
cgtgagattgtctgggcggacaaagaccgaggcgccatcaggcctctcatggacttgccg
gtcaagccggtgacccagagaagcgtccctctcaaccttggaaaaaaagacaatcccgcc
gtctcggacagaccgtcggcgggcaccgagaagaccgccgcggacccggatgccgagaaa
cctgccgaaggaccggacgtaaaggagcgcttgtcgtcttctgacggggcgctctccaga
gaaaaagctggcggcgacaagccctcgctctccgacaaagactctgaccggagctcggga
gtcgacagagagcgggacagtaacagcagaatggacagagagcgggagagaggttctgaa
cgagggcgggaaaaaggctcgcggtcggaacgagagcgggaaaaagccacggcgtcggac
agagatcaggaaaaagcttcgggctccgacagggatcgggaaaaagcctcgggctccgac
agggaccgggaaaaagcctcgggctccgacagagatcgggaacggggttccgacagagac
agagagcgggaaaaggcttcggatcgagagcgggaaaaggctcccgacagagatcgggct
aaggctttcgaccgagaccgagaaaaggcttctgaccgggatcgcgccaaggcgtccagt
tcagaccgggatcgcgccaaggcgtccagttcagaccgcgatcgcgccaaggcgtccagt
tcagaccgggatcgcgtcaaggcggcaagttcagaccgggatcgcgccaaggcggcaaat
tcagaccgggatcgcgccaaggcggcaagttcagaccgttcggaccgagatcgcgcaaaa
gcctcggacagggatagagagaaggcctccggttctgatagggatcgagaaaaagcgtcg
ggatctgaacgagatcggactctggcttcagagaaagagcgcgacaaagcctcgggatcc
agctcaaagaaggtgtccgccgtgaaggaggccggtgaaaagtcgcagaagacggagcgc
aaaaactccgcaagcgctggctcaagcgctggcggaagagccgtctgcttggacaaaatg
accatagcggagaaatcggccatcggcaagaagcagggacacgaccaagagaagaccgcc
ccttcctccgccgacaaagctgccagatcggaccggagtgcttccaaggagaggacggcc
aagagcgctgccgccgccaccgccgggagaaaagcagatgccgctcccaaagatgggaaa
gagggagagaccaaaacggtgaggaccaagcccaggatcagtcgcaaggtcttatccact
agtcagcctgccaggtccgctcaggagcccaagctggattctgagcaaaaagagggcgag
aagaagagcgactctgtggcaactttggagcaggtgacgccggctggcccccaaagcgcc
ggggagcagcagctcctggttcaggcacctcctcgctccaagtgggagcgagaggacgac
gaggaggaggaagagggacgggcggcgccaacggtagtggctcctcaagtcacccccaaa
gagccgtcgcccgttccccacaagacggagctgctccaaactgataagaaggtcgcgctc
aaggaggagaagaagaggacgcccaaggacgagagcaaaggtggcaaagtcaagcccgcc
cgagaggagagggagaggaaggcggcggcggcgggccaaaggacacccaaagccgaggga
agggaggccaaggaggagaagaaccccagcggcccggagcccaagagacagcggctgtgt
tcggacctggcccgcgagacggacgaggccgccttcgtgcctgactacagcgagggcgac
gacgcctccgacagcagcccctccggcgaccgcagcgactcgccctcctcctccgccgcc
ggtggagacaagaagaagaaaaagaaacacaagaagcacaaaaagcacaagaagcacaag
aagcacaaagtggctgacaaggacaaggacaaggagggcggcgagcacaagcagaaacac
aagaagaagaaacacaagaagagtaaagacaaggacgcggaggaaggccacgccgagcag
gagcggcccaagagccccgccggaaccgacagcgtcaaagcttga
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