Syngnathus scovelli (Gulf pipefish): 125968993
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Entry
125968993 CDS
T08785
Name
(RefSeq) RNA exonuclease 5 isoform X1
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
125968993
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sscv03009
]
125968993
Ribosome biogenesis [BR:
sscv03009
]
Eukaryotic type
Pre-60S particles
RNases
125968993
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RNase_T
Motif
Other DBs
NCBI-GeneID:
125968993
NCBI-ProteinID:
XP_049576571
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Position
5:290882..295412
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AA seq
744 aa
AA seq
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MEPSPSKPFNGKKRKKGADLPPDAAKRARRQRAGADQTERAGPLISVAPQRLRQPIAAEE
LTELLHYAALGDGGAVGRPRSPSWCDVRAQSRVEGVNVVVVEGVSQSDFYNHYLTLSNLR
SRFSNRLTFTSGGSGALLSTIFGTPVEAPRRQDGKLNKALRTHPVVLKYGTSKRGLTAYV
LGQEELIKRRYPVKGLPGFEDFACVDRVDVTDASPLFGLDCEMCLTRRGYELTRVSLVDS
EGKCAMDRLVKPDSPILDYLTKFSGITAAMLDPVKRSLRDVQAELRTLLPRDAVLVGHSV
NNDLAALKLIYPHVIDTSLLYVKEFGQRFKLKLLAEVVLGRSIQTPEREGHCPAEDALAA
LDLAKYFISKSPLKLVEDHLEDLWGLTAEDDDDGDEPAPSSRFADALQRLGRSLCYVGKR
RDITLHPANQLWHNSDKQVLASFLGQSKRPFFSVLSFSSFSSRPPCQDHKVSRRLQQMRV
VFAGPFPAGFSQGEVKRLFSRCGSVRAVQMLSGTHRVHAAVEFKLLEGAALALQLLNGAP
VQGQALKVQRPVSESTLDFELTLEALTNDAVNACRLYTLKRAHAGDGQASASGQLSHESL
TKTFGRFGAVESVTLTGKPGGRAKRAFIEFQRSEGKRAAVESAAELWSEKYVTCPALTPA
HAACGLWRHRGPHQPRGQTEPEHPQNVAERHRMQKLDARLGKVFRSLPEGALSVVLLLAP
HSVEEPPSPGLCFLEIKSKVKGLT
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atggagccctcgccctcgaagcccttcaacgggaagaaaagaaaaaagggtgcggatctt
cctcccgatgcggcgaagagggccagaaggcaacgcgccggcgctgaccaaaccgagcga
gcgggcccgctgatctctgtggctccccaacgcctgcggcagcccatcgccgccgaggag
ctgacggagctcctgcactacgccgctctcggggacggcggcgcggtcggacggccaagg
tcgccgagttggtgtgatgtgcgcgcacaaagccgtgttgaaggcgtcaacgtggtggtg
gtggagggcgtgagccaaagcgacttctacaatcactacctgactctgagcaacttgagg
agccgcttcagcaataggttgaccttcacgtcgggcggcagcggcgccctgctttctacc
atcttcggcacgccggtggaagcgccgcggcggcaagacggcaagctgaacaaagcgctg
aggactcacccggtggtgctcaagtacgggacgagcaaacggggcctgacggcctacgtg
ctcggccaggaggagctgatcaagcggcgttaccccgtgaaagggctgcccggcttcgag
gactttgcgtgcgtcgaccgcgtagacgtgacggacgccagccctctctttggactggac
tgcgaaatgtgtctcaccaggaggggctacgagctgacccgagtctccctggtggacagc
gagggcaagtgcgccatggaccggctggttaaacccgacagcccaatcctcgactacctg
accaagttctccggcatcacggcggccatgttggatccggtcaagaggagtttgcgtgac
gtccaagccgagctgaggacgctgttgccgcgcgacgccgtcctggtgggccactctgtc
aacaacgacctagccgctctcaaactgatctatcctcacgtgattgacacgtcgctgctc
tacgtgaaagaatttggccagaggttcaagttgaagctcctggccgaggtggtgctcggc
aggagcatccagacccccgagcgggaaggccactgtccggcggaggacgccttggccgct
ttggatctggccaaatacttcataagcaagtcacctctgaagcttgtcgaggatcacctg
gaggacctttggggtttgaccgcagaagacgacgacgacggcgacgagcccgcgcccagt
agcaggtttgccgatgctttgcagcgtctgggcaggtccctctgctatgtggggaaacgc
cgcgacatcaccctacacccggccaatcagctgtggcacaactcggacaaacaggtgctg
gcctctttcctgggacagagcaagcggcccttcttctcggtgctcagcttttcctccttc
tcgagccgccctccatgtcaagaccacaaggtgagccgccgtcttcagcaaatgcgcgtg
gtgtttgccggaccgtttcccgccggcttctcccagggagaagtgaagcgactcttcagc
cgctgtggctcggtcagggccgtccaaatgctgagcggcacgcacagggttcacgccgcg
gtggagttcaagttactggaaggagccgcgctggcgctgcaactgctcaacggggccccc
gtgcagggacaggccctgaaggttcagaggccggtgagcgagtccacgctggattttgag
ctgactctggaggcgctgaccaacgacgccgtcaacgcgtgccgcctctacacgctcaag
cgcgctcacgcaggggacggccaggcttctgcctccggccaactgagccacgagtccttg
acgaagacgtttggccgctttggcgccgtggagagcgtcacgttaacgggcaaacccgga
ggacgggccaaacgggccttcatagagtttcagcgttccgagggcaaacgagcggccgtg
gaatccgccgcggaactttggtcggaaaagtacgtgacgtgtccggcgctgactccggcc
cacgccgcttgcggcctgtggcggcaccgagggccgcatcagccgagaggccaaacggag
ccggaacatcctcagaacgtggcggagcgtcacaggatgcaaaagctggacgcgcgcctc
ggcaaagtcttccgctctctcccagaaggcgccttgtctgtggtgctgctgcttgctccc
cacagcgtcgaggagccgccgtcacctggcctgtgcttcttggagatcaagtccaaagtc
aaaggtctcacatga
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