Syngnathus scovelli (Gulf pipefish): 125969103
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Entry
125969103 CDS
T08785
Symbol
ccdc88aa
Name
(RefSeq) girdin isoform X1
KO
K25392
girdin
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
sscv03037
]
125969103 (ccdc88aa)
Cilium and associated proteins [BR:
sscv03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
125969103 (ccdc88aa)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HOOK_N
Motif
Other DBs
NCBI-GeneID:
125969103
NCBI-ProteinID:
XP_049576776
LinkDB
All DBs
Position
5:10187355..10204765
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AA seq
1804 aa
AA seq
DB search
MESVFFQPILDQFMMSPLVTWVRTFASHDEGRNADFNELLDGVFLNEVMSQIHPPAVPQT
TTKMRKDPSQRVQNLTFLVQQIKAYYLENLRQLILIPLPNVLQLSRTPHTEQSLVEMKKL
LLLLLGCAIQCEKKEKYIEIIQALDFDTKAAIAVHIQELTHSQDNLLDLHWLECSNMPAD
ELEVVAKTIATNLQHLLDQRDSHLETIAELTQEREGVVRVLCSSSGPQSAVYPAIMQQQQ
AGTQQHLVVELADSKAKIRRLRHELEEKSEQLLDNRHDLENMEAELKRIQQENLKLLVDA
RAARAYRDELDALRERALKADKLECEVGRYREQMHKMEFYKAKVEELKEDIRVLQETKEV
LEDQLAGWRARSDQIHQLEKHSLLLKARIHDMEQGRDADRKCIEELQDENLTLCLAQRRS
MEESQHLGWELEQLSKSTDSSQGQQTLSEEVNERIRSRLLKLEKENQSLLKTIEELRHAC
LHHNTHSDKRSHHSEKDRVRQVVCCADKWTSDENKSLTSCSREQNCRNASNLGTIKDIFD
TDAEDQTPEQDHVGLCQSANTVSHIQEKGKLEDSNSGGHFKAADLEENISNSAHYAVGSH
NGSRSSSSSHDGIFIGQPTRFTNTNKHTQHLEAKCKALDSMNQQLQTSLGNTERKVHRLE
TEVQELEADNQSLQATLEELRITARRLDQVETEKQSLEQETAALEKVKRQLEKETRRLRQ
QAEIQEANLDSSNVCMASLEREMRCLVKEVEELRETAERFKGLERDNRELAKQAAIDQRT
LDTLRKELVSEKLKTRQKEDEIERLSHEQEIRILNRENKQSVELDTAERRRFNMLESELE
SSMKKCLQIKDDKMAVLESRLQESSNLNEHLRHELRTVKVSYEALQQKHEEEVTESCATP
LRENGKEMSEWLRESHEATKELLNIKDRLIEVERNNATLETERQATQAHLKQLESQSDSQ
QAQILALQRQAASLQENTTTLQALNADLQVEKSTLNSQSASLMAQNAQLQQQQVGIESER
DSAIREREELRGAHEQLLRDHERLAALHERQAAEYEVLMGKHGCLKNAHRTLELEHRTLQ
DRYNNLLQQRTKLEDLEKALKEEQMRMSLEKEHHRTAAAECCRLRDEKDWLNQTYHQILN
DNELLKADHKQLKSQLNESKLAHTWLEADYSKLKKEYQQLDITSTKLTNQCELLSQLKGN
LEEENHHLLSQIDTLMLQNRTLLEQTMESKDLFHIEERQYIDKLNDLRRQKEKLEEKIMD
QYKFYEPSPPRRRGNWIALKLKKLIKSNSREQGLEHSLTPTHSEAQLSCHDSSSFISSDG
SAGSTSTSLGDIIPSQPSTTLKVFPHMRSKPKNKDKLKSLIQRSLSLSSLLYTSAPLEQK
QFTSSSEELEGSEADVQDRKTISTSFLSTSILSTRHLHPTTEPSMQVHATASGTDVPDVS
QLQLDKDSSDSAAPSGLEDDELQHQGLNVTQSRAQSESSGEFSISLDNEPWSNGSSPVQQ
PLSHHTSASYHLPRDTSTPQHTQQTSSTAQKQKALTIPTANSQETELKLIHQQKEPTPSH
DFWLARGAKSLRRGSKGKRRSSDSVATLSTNLRSNTDCTQTLACSPVTVFYVQGKSSSMS
GCLNCFSNPLGKEGRLKGLSKSLPRASSVISTADGSSRYPSITNDCRVVMKTETLPGPIS
EKHNNQNQETAAASNQQVSESGAPELSPPVKPPRDPTVLVAKDHSNPPVQESDLNPPFSL
YSVFSNTIFRDSEGSHIDAVTRNNQMDISLDKSTCKAELHSSEPQVFSTQIANTQNGKSE
ESQS
NT seq
5415 nt
NT seq
+upstream
nt +downstream
nt
atggaaagcgtttttttccagcccatcctggatcagttcatgatgagcccacttgtcacc
tgggtgaggacttttgcatctcatgacgaaggccggaatgcggatttcaatgaattgttg
gatggagtctttttgaatgaagttatgagccaaatacatcctccagccgtaccccaaact
acaaccaaaatgagaaaggatccaagtcagcgagtccagaacttgacctttcttgttcag
caaatcaaagcatattatctggaaaacctgagacagttgattctgattcctcttccaaat
gtgctgcagctttcgaggactcctcacactgagcaaagtctggtggaaatgaagaaacta
ttgttgttactcctgggatgtgcaattcagtgtgagaagaaagagaagtacattgaaata
atccaggcgcttgactttgacacaaaagcagcaatagctgtgcacattcaagagctgacc
cacagtcaagacaacctgctcgacctacattggttggagtgcagtaacatgcccgccgat
gagctggaggttgtagcaaagaccatagctaccaatcttcagcacttgctggaccagaga
gactcccatctggagacgatagcagagctaacacaagaaagggaaggtgtggttcgtgtg
ctttgtagctcatccggcccgcagtcggccgtctatcctgccatcatgcaacaacagcag
gcgggaactcagcaacacttggtggtggaacttgcagactcaaaagccaagattagacga
ctcagacacgagctagaagagaagagtgaacaattgctggacaacagacacgacctggag
aacatggaggcagagctcaagaggatccagcaggagaacttgaagcttcttgtcgatgcc
cgagcagcccgtgcctaccgcgatgagctggatgctctgagagagcgtgcgctcaaagct
gataagctggagtgtgaggtcggacgctacagggagcaaatgcacaagatggaattttac
aaggccaaagtggaggagctcaaggaggatatcagagtgctgcaggaaaccaaagaggta
ctagaagatcagttggcaggctggagggcacgctcagatcaaatccaccaactggagaaa
cacagcctgctactgaaggcccgcatacatgacatggaacaaggaagagatgcagatcgt
aaatgcattgaggagctgcaggatgaaaatttgactctgtgtttagcacagaggagaagc
atggaggagtcccagcacttgggatgggagttagaacaactttccaaaagcaccgacagc
tcccagggacagcagactttaagtgaggaggtgaatgagagaatccgaagtcggctgttg
aagttggagaaggagaaccaaagtctcctgaagactattgaggagctcagacatgcctgt
cttcaccacaacacgcattccgacaaacgcagccaccacagcgagaaggatcgtgtccgg
caggtggtctgttgcgccgacaagtggacctcagatgaaaacaaatcattgacttcctgc
tcacgtgagcaaaactgcagaaatgcatccaaccttggtacaataaaagacatttttgat
acagatgctgaagatcaaacaccagagcaagaccatgtgggcctttgccagtcagctaat
acagtcagtcatattcaggagaaaggaaagttagaggatagcaacagcggagggcatttt
aaagcagctgatttggaagaaaatatttcaaatagtgcccattatgctgttggatcacat
aatgggtcaagaagcagcagttccagccatgacggtattttcattggccagccaacacgc
ttcactaacaccaacaagcacacgcagcatctggaggccaaatgcaaggcattggactcc
atgaatcaacaactgcaaacttctcttggtaacacagagcgaaaagtccaccgattggag
actgaggttcaagaactggaggcagacaaccaaagcctccaggccacattagaggaactc
cggattactgcacgccgtctggaccaagtggaaacagagaagcagagtttggaacaagaa
acagcagcattggaaaaggttaagagacaactagaaaaggagactcgacgattgcgccag
caggctgaaattcaagaagccaacttagatagcagtaatgtctgcatggcgagcctggaa
agggagatgcgctgtctggtgaaggaggtggaggagttgagggagacagctgaaaggttc
aaagggctggagagagacaacagagaactggccaagcaagctgcgattgaccaaaggacc
ttggacacccttagaaaggaacttgtcagtgagaaactgaagacccggcagaaagaggat
gaaatagagcgtctgtcccatgagcaggagataagaattctcaacagagagaataaacaa
tctgtggaactcgacacagccgaacgcagaaggttcaatatgctggagtcagagttagag
tcgtccatgaagaagtgtcttcaaattaaagacgacaagatggctgtgctggagtcccgt
ctacaagaatcctcgaaccttaacgagcatcttcgccacgagctcagaactgtgaaagtg
agctatgaggctttgcagcaaaagcacgaagaggaggtgactgaatcatgcgccacccct
ctgagagagaatggaaaagaaatgagtgaatggctgcgtgaaagccacgaagccaccaaa
gagctcctgaatattaaagaccgactgattgaagtagagaggaacaacgcaacactggag
acagagcgccaggctacgcaggcccatctgaagcagctggagagtcagtctgacagtcaa
caggctcagatcctcgccctgcagaggcaagctgcctccctgcaggagaacaccaccact
ttgcaggcactcaatgcggacttgcaggtggaaaaatctacattgaactcccagagtgct
tccctgatggctcagaatgctcagttgcagcagcagcaggtgggaatagaaagcgagagg
gacagtgccatacgtgaacgtgaagagctgcgaggtgcccatgagcagctattacgggat
catgagcgcctggcggctctccacgagcggcaagccgcagagtatgaagtcctcatgggg
aaacacggctgtctgaaaaatgcccatcggacgctggagctcgaacaccgcacactgcaa
gacaggtacaacaacctgttgcagcaacggaccaaattagaagatctggaaaaggccctg
aaggaagagcagatgagaatgagtctggagaaggaacatcataggaccgctgccgctgaa
tgttgcaggcttcgggatgagaaagactggctgaaccaaacttatcatcaaattctaaac
gacaatgagctgctgaaagcagatcacaagcagctgaagagccaactaaatgagagcaag
ctggctcacacctggctggaggccgactattccaagctcaaaaaggagtaccaacaactt
gatatcacctccacaaaactcaccaaccagtgcgagctgctgagccagttgaaggggaac
ctggaggaggagaatcatcatcttctgagtcaaatagacacactgatgctgcagaaccgg
actctgttggaacagacaatggagagcaaagatctgtttcacatagaggaacgacaatat
attgacaaacttaatgatttgaggagacagaaggagaagctcgaggagaagataatggac
cagtataagttttatgagccctcacctcctcgcaggcgaggaaactggatcgctctcaag
ctgaagaagttgatcaaatcgaatagccgtgaacagggactagaacattcactcacaccg
acacactcggaggctcagctctcatgtcacgatagcagctccttcattagttcagatggg
tctgcaggctccacctccacatcattaggtgacatcataccatcacagccaagcaccaca
ctgaaagtgtttccccatatgagaagcaagccgaagaacaaagataagctgaagtctctc
atccaacgttccttgtccctgagcagcttgctgtacacctctgccccgttggagcagaag
cagttcacatccagctcagaggagttggaaggctctgaagctgatgtgcaggacaggaaa
acaatatcgacctcattcctaagcacatccatcctatccacacgacacttgcatcccacc
actgaaccatccatgcaagtccacgccacagccagtggcactgatgtcccagatgtgtca
cagctacagctagacaaggattcaagtgatagtgccgcaccatctggtttggaagacgac
gagctgcagcatcaggggcttaatgtcacccagagtcgagcccaaagtgagagcagcggt
gagttcagcatcagcctggataatgagccttggtcaaatggtagcagccctgtccagcag
ccactgtctcaccacacctctgcctcgtaccatctgccaagggacacttcgacaccccaa
cacacacagcaaacctcctccacagcgcaaaaacagaaagccttgaccatccctacggca
aacagccaggaaacagagctcaaactaatacatcaacagaaagagcctacaccaagccac
gatttctggctcgcacggggagcaaaaagcctcagaaggggctctaaaggaaaacgtcgc
tcatcagattcagtggccacgttaagcacaaatttaagatcgaataccgattgtacccag
actttagcttgttcaccagttacagtgttttatgttcagggtaagtcatcctctatgtct
gggtgcctcaattgcttctccaatccgctgggaaaagaaggccgactcaaaggcttgtcg
aaaagtcttcctcgtgccagcagtgtcatttccacagctgatgggtcatctagatatccc
agcatcaccaatgactgcagggtggtaatgaagactgagacacttcctggtcccatttca
gaaaagcacaataaccagaatcaagaaacagcagcagcatccaatcagcaagtcagtgaa
agcggagcgcctgagctcagtcctccagtcaaacctccaagagacccaacagtccttgtt
gctaaagaccactcaaacccccctgtgcaggaatcagatttaaaccccccatttagtctt
tactctgtcttctcaaacacaatcttcagagattcagaagggagtcatattgatgctgtt
acgaggaacaaccagatggatatttccctcgacaagtccacctgcaaagcagaactgcac
tccagtgagccacaagtcttctcaacacagattgcaaacactcaaaatggaaaaagtgaa
gaatcacaatcttga
DBGET
integrated database retrieval system
