Syngnathus scovelli (Gulf pipefish): 125969206
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Entry
125969206 CDS
T08785
Symbol
grin2bb
Name
(RefSeq) glutamate receptor, ionotropic, N-methyl D-aspartate 2B, genome duplicate b isoform X1
KO
K05210
glutamate receptor ionotropic, NMDA 2B
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04020
Calcium signaling pathway
sscv04080
Neuroactive ligand-receptor interaction
sscv04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
125969206 (grin2bb)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
125969206 (grin2bb)
04082 Neuroactive ligand signaling
125969206 (grin2bb)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sscv04040
]
125969206 (grin2bb)
Ion channels [BR:
sscv04040
]
Ligand-gated channels
Glutamate (ionotropic)
125969206 (grin2bb)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
NMDAR2_C
Lig_chan
Lig_chan-Glu_bd
ANF_receptor
SBP_bac_3
Motif
Other DBs
NCBI-GeneID:
125969206
NCBI-ProteinID:
XP_049576999
LinkDB
All DBs
Position
5:5122422..5180489
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AA seq
1750 aa
AA seq
DB search
MFKGRHLHSSTMLVSLPPSPACPQEAHLLSASCPHRPPAVTLKQRSRHPNAQPQLLLLFL
ILLALLQPVCGARGRGGGPGSGPGGAPGGQGGPRGGSTQRGVVIPPHYSPGPQVLPPINP
KLISSLSIAVILVGNSSEVALGAGLEKEDFLHIPYPPKVEVVTMNETDPKSIINRICTQM
SRNSLQGVVFGDDTDQEAIAQILDFISAQTHIPILGIRGGSSMVMAAKDDNSMFFQFGPS
IEQQASVMLNIMEEYDWYIFSIVTTYYPGYQDFVNKVRSTIDNSFVGWELEEVLLLDMSV
DDGDSKIQNQLKKLQSPVILLYCTKEEASTIFEVAHSVGLTGYGFTWIVPSLVAGDADHV
PSVFPVGLISVTYDEWDYNIEARVRDAVAVIATATSTMILDRGPHTLIKSSCFGTLDKKN
INTGHSKEILRYIMNVTFEGRNLSFSEEGHQIFPKLVIILLDKDRTWDRVGKWEKGSLAM
KYHVWPRFELYSAAEEHEDHLSIVTLEEAPFVIVEDVDPLSGTCMRNTVPCRKQLKLINQ
TGDSGIYIKRCCKGFCIDILKKIAKAVKFSYDLYLVTNGKHGKKVNGTWNGMVGEVVLKN
AHMAVGSLTINEERSEVIDFSVPFIETGISVMVSRSNGTVSPSAFLEPFSADVWVMMFVM
LLIVSAVAVFVFEYFSPVGYNRCLADGREPGGPSFTIGKAVWLLWGLVFNNSVPVQNPKG
TTSKIMVSVWAFFAVIFLASYTANLAAFMIQEEYVDQVSGLSDKKFQKPNEFSPPFRFGT
VPNGSTERNIRNNYRDMHTYMTSFHQKNVDEALYSLKTGKLDAFIYDAAVLNYMAGRDEG
CKLVTIGSGKVFASTGYGIAIQKDSGWKRAVDLAILMLFGDGEMEEFEALWLTGICHNEK
NEVMSSQLDVDNMAGVFYMLGAAMVLSLITFICEHLFYWQLRFCFMGVCSGKPGVTFSIS
RGIYSCIHGVQIEENKSTIDSPSSSIKKNMNNTHSNILRLLRTAKDMTAVPGINGSPHAA
LEYNHGGRESGIYDIQEHRRSLVGHPADCKSAPPYIQEDSMFTDYISEVERTFGNLPLKD
NNLYQDHYRHHHPVSALGMSGPPPNRPRSLGSASSLEGGIFDCESLGGGVAPIFTTQPRP
SMTHRNTNKFDLIAGHPPADSNQVGFKGSNVYGRFSFKGGASSTGFIGGHERYCGGGGGG
GGSGGDDGNIRSDVSDISTHTVTYGNLEGNAKRHKQYRDSLKKRPASAKCRREQDELELS
GFRRRPHHHTVHHHFPHGPLAHRTISPPLERKRGGGNASPYLFRKDKENLREFYADQFRS
KEGKWEQEGGSGGSGVGVGSGGGICKSLVPVEDFLKGKCKKQDSKGGIGSVSAGQQAHTC
WEKGVSGLGAGGIAGGDWECRNCHSVCHHSGGAGGSCPASGIGASNVRPNSASCKRCDSC
KIQPSNLYNISEDNNIVFSAGKSNIGAGQTPTQSRKLGPGGRVLRRQHSYDTFVDLQREG
SGRKGGVGGGVGGQFAQPRSVSLKDKDRYMEGPSPYAHMFERYAGERESPMFGGIGGDRS
KGGSSFSLFRGGEGGLHRRSVGERDLRDRDRAKMGGGSGGGGGGGRGAGTYSLSKSLYPD
KVNQNPFIPTFGDDQCLLHGAKPYYMKKPQTQQQQQQLLNNTRGGGDFRGSMGATSYLPA
SATAGVMSNVAPRFPKDLCLGGVGGPMGNHHGVNKLMPGSRDTLGLSQRPFNGASNGHVY
EKLSSIESDV
NT seq
5253 nt
NT seq
+upstream
nt +downstream
nt
atgttcaagggacggcatttacactcctccacaatgctcgtcagcctccccccgtctccc
gcctgtcctcaggaagcacaccttctctccgcctcctgcccccatcgtcctcctgctgta
accctaaaacagagatcgcgtcacccaaatgctcagccacagctgctcctgctctttctt
attcttttagcgctcctgcagcccgtctgcggggctcggggcagagggggaggtccaggt
tcaggaccaggaggcgcccctggagggcagggtggcccgaggggaggcagcacccagcgt
ggtgttgtcattcctcctcattactcccccgggccccaggttcttcccccaatcaacccc
aaactcatcagctccctcagcatcgctgtcatcttggtcgggaactctagtgaagtggcc
ctgggggcgggacttgagaaagaggacttcctgcacatcccttacccaccaaaggtggag
gtggtcaccatgaacgagaccgatccaaagagcatcatcaatcggatctgtacccaaatg
tcccggaactctttgcaaggcgtggtttttggcgacgacacggaccaggaggccatcgcc
cagatcctggacttcatctcggcccagactcacatacccattttgggcatccggggaggc
tcttcaatggtcatggctgccaaggacgacaactccatgtttttccaattcggcccgtcg
atcgagcagcaggcttcggtcatgttgaatatcatggaggagtatgactggtacatcttc
tccatagtgaccacatactacccaggctaccaggactttgtcaataaggtccgcagtacc
atcgacaatagctttgtaggctgggagctggaggaagtcctcctgctggacatgtcagtg
gatgacggtgactccaaaatccagaaccaattgaagaaactgcagagtcccgtcatcctt
ctgtactgcacaaaagaggaggccagcactatcttcgaggtggctcattctgtgggtctc
accggttatggcttcacttggatcgttccctcactggtggctggagatgcagaccacgta
ccctctgttttcccagttgggctgatatcggtgacatacgacgagtgggattacaacatc
gaagcccgggtgcgtgatgcagtcgccgtcattgccacggcgacgtccaccatgatactg
gatcgggggcctcacaccctcataaaatccagctgcttcgggacccttgacaagaagaac
atcaacactggccactccaaggaaatactcaggtacatcatgaatgtgacgttcgaaggg
cgtaacctgtcattcagcgaggagggccaccagattttccccaaactagtcatcattctt
ctcgacaaggacagaacgtgggacagggtgggcaagtgggagaagggctctctggccatg
aagtaccacgtgtggccacgtttcgagctctactcggcggcggaggagcacgaggaccac
ctgtccatcgtcacgttggaggaggcgccttttgtcatcgtggaggacgtggaccctcta
agcggcacctgcatgaggaacaccgtgccttgtcgtaaacagctcaaactcatcaaccaa
acaggcgattcgggaatctacatcaagcgttgctgcaaaggtttttgcatcgacatcctg
aagaagatcgccaaagcggtcaagttcagctacgacctctacctggtcactaacggtaaa
cacggcaagaaggtgaacgggacgtggaacggaatggttggagaggtggtacttaagaac
gctcacatggcggtgggctcactcaccatcaacgaagagcggtccgaggtcatcgacttc
tccgtgcccttcatcgagacgggaattagcgtcatggtttcccgaagtaacgggaccgtg
tcaccctctgccttcttagagcccttcagtgctgacgtgtgggtgatgatgtttgtgatg
ctgctgattgtgtccgccgtcgccgtgtttgtgtttgagtacttcagcccggtgggttac
aatcgctgcctggcagacggcagagaacccggcggtccctccttcaccatcggaaaggcc
gtctggctgctttggggtctggtgttcaacaactctgtgccggtgcaaaatcccaaaggt
accaccagtaagatcatggtatcagtgtgggcctttttcgctgtcatcttcctggcttcc
tacactgccaacctggcagccttcatgatccaggaggagtatgtggaccaggtgtcgggc
ctgtcagacaaaaagttccagaagcctaacgagttttcgccgccgttccgctttggcacc
gtgcccaacgggagcacagagcgcaacatccgcaacaactaccgagacatgcacacctac
atgaccagcttccaccagaaaaatgtggacgaggccctgtacagtctcaagaccggcaaa
ttggacgccttcatctatgacgccgcagtgcttaactacatggcgggacgggacgagggc
tgcaagcttgtcactatcggcagtggcaaagtatttgcctccactggttacggcatcgcc
attcagaaagactcgggttggaaacgagcggtggacctggccatcctcatgctgtttgga
gacggtgagatggaggagttcgaggctttatggctgacaggtatctgccacaatgagaag
aatgaggttatgagcagtcagctggatgtggacaacatggcgggggtcttctacatgctc
ggggccgccatggttctgtcacttatcaccttcatctgtgaacatttgttctactggcag
ctgcgcttctgcttcatgggcgtgtgttccggaaagcccggggtcaccttctccattagc
aggggtatctacagctgcatacacggagtacaaattgaggaaaacaaatcaaccatagac
tcgccttcatcatccataaagaagaacatgaacaatacccactcgaacatcttgaggttg
ctccgcactgccaaagacatgactgcagtgccgggcataaacggctcgccgcacgcggcc
ctggagtacaaccacggtggtcgtgaatcgggcatttatgacattcaggagcaccgccgc
agcctcgtagggcacccggcagactgcaagtcggcaccgccctacatccaagaggacagc
atgttcactgactacatcagcgaggtggagaggacttttgggaacttgcccctgaaggac
aacaacttgtaccaggaccattaccggcaccaccacccggtctcggctttgggtatgtcc
ggccccccgcctaataggccgcgtagcttaggcagcgctagctcattggaagggggcata
tttgattgcgaaagtttagggggaggagtagcacccatcttcaccacccagcctcgcccc
tccatgactcacaggaataccaataagtttgacctaattgcaggtcacccccccgcggat
tccaaccaagttgggttcaagggaagcaatgtgtacgggaggttttcattcaaaggaggc
gcatccagcacggggttcatcgggggtcatgaaaggtactgcgggggaggtgggggcggg
ggaggctcagggggtgacgacggaaacatccgctctgacgtgtcggatatctccactcac
accgtcacctacggcaacctggagggcaacgccaagcgccataagcagtacagggacagc
ctgaaaaagaggccggcctctgccaagtgcagacgggaacaggacgagctggagctgagc
ggcttcaggaggagaccccaccaccacaccgtccaccaccacttccctcacgggcccttg
gcacaccgcaccatctcacctcccttggagcgcaagcgaggagggggtaacgcttcacct
tacttattccgcaaagacaaagagaacttgagggaattctatgctgaccaattccgctca
aaggagggcaaatgggagcaagagggtggaagtggaggaagtggtgtgggcgttggtagc
ggtggcggtatctgtaaaagcttagttcctgtggaagactttctcaaaggtaaatgcaag
aagcaggattccaaaggtgggatcggttcagtgtcggcaggtcagcaggcccacacctgc
tgggagaagggcgtttccggactgggagcaggtggcatagccggaggtgactgggagtgt
cgtaactgccacagtgtgtgtcaccacagcggaggggcggggggctcctgccctgctagc
gggattggggcgagcaacgttcgccccaactctgctagctgcaagcgatgcgactcgtgt
aagatccagcccagcaacctctacaacatcagcgaggataacaacatagtgttttctgca
gggaagagcaacataggagcaggccaaacgccgactcagagcaggaagcttgggccgggt
gggcgggtcttacggaggcagcattcttatgacacgttcgtagaccttcagagggagggg
tcaggtcgcaagggaggggttggcggcggcgttggcggccagtttgcccagccccgaagt
gtgagccttaaagacaaagaccgctacatggagggccccagtccttatgctcacatgttt
gagaggtacgcaggggaaagagagtctcccatgtttggagggatcggcggagacaggtct
aaaggtggctcctcctttagtttgtttcgcggaggcgaaggtgggttgcatcggcggtcc
gtgggcgagcgagacctaagagacagggacagggctaagatgggaggtgggagcggcggt
ggcggtggtggtggcagaggcgccgggacttactccttgtctaaatctctctacccagat
aaggtgaaccagaaccccttcatcccaaccttcggcgatgaccagtgtcttttacacggt
gccaaaccgtactacatgaaaaagccacagacgcagcaacagcagcagcagctactcaac
aacacccgaggaggaggggacttccggggctccatgggggccacttcttatttgcctgcg
tcggccacggccggggtgatgtccaatgtagcccccaggttccccaaagatctgtgtctg
ggcggggtgggcggtcccatgggcaaccaccacggggtcaacaagctcatgcctggcagt
cgggacacgttaggtttgagccaaagacctttcaatggtgcaagcaatggacacgtctat
gaaaagctctccagcatagagtccgacgtctga
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