Syngnathus scovelli (Gulf pipefish): 125969363
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Entry
125969363 CDS
T08785
Symbol
vps54
Name
(RefSeq) vacuolar protein sorting-associated protein 54 isoform X1
KO
K17600
vacuolar protein sorting-associated protein 54
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sscv01009
]
125969363 (vps54)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sscv04131
]
125969363 (vps54)
Protein phosphatases and associated proteins [BR:
sscv01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
125969363 (vps54)
Membrane trafficking [BR:
sscv04131
]
Endosome - Golgi transport
Tethering complex
GARP complex
125969363 (vps54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54
Vps54_N
EXOC6_Sec15_N
Motif
Other DBs
NCBI-GeneID:
125969363
NCBI-ProteinID:
XP_049577249
LinkDB
All DBs
Position
5:1223070..1229756
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AA seq
982 aa
AA seq
DB search
MAARPVSSPVPRPAVPDGLYRKERDPSSPCPSPSSSRRRPVRSLPDVCPKEPTGDGRGLR
EGPSVVSEHDRWTVYSSKVNLPAALNDPRLAKRESDFFTKTWGLDFAETEVMPSFCLGNI
TQEHFRAYLQESAQRERIHERCKTLCPVKDDFADAIYSVNSNQEKSRAELDQVPKIFLKP
DFALEEPVTFNAVLPWSHFNGGGRSNRDVASSKLLQEKLSHYLDVVEVSIARQISLRSEA
FFHAMSSQHELRDRLKETQEAVAVLRRRTAAIDRIMCQGPLAALRAALARNNCVKLHGKL
KLMAAVHQTQPTVQLLLSTSEFVGALELIATTKEVLQQELQGIHSFRHLGSQLCELEKLI
DKMMVEDFSMYARSELNRSLRDDTQLLEKERLQSLVFGLLRQRKLDFLDIYGDEMIAAAK
AIVSQCVAERLLSIDDIDTEVVTKLAEQMRLMTFPQWFEFLKDVFDCFLLFLHRMKATLG
VIRSVVLEVLESARKNSSAAKSHPEQLRSHEAAGTCGDVAELAYLTHDGPFISDALHGAQ
RAGTTTPPGTPDADSASGDQNFMYNSAGDTMPSDLELNRVLNNIQELLHAASDISHDRCV
KILTARAKDGSLERISSGEFVDLSVAVESFAKDTEELCGRRSVSLRGALQSQADRFVHRF
HEERKTKLSLLLDNERWKQAEVPAEFQELVDSMADGTIALAVRKAAGSQPPARTLCSKIT
PFHHMAGPDERKPGDFLLVKGNKYAVVGTVLLLIRIFLEYCQCVNDIPAIATDMLMRLAD
LLKHFNSRSCQLVLGAGALQVVGLKTITTKNLALASRCLQLVVFYIPVIRQHFESKLQPK
HLSVLRHFDHIIKDYNDHVSEIWAKLVAIMDSVFEKVLTKYEVKAPMPSACFRNVCKQMV
KMHEAINDLLPAEQTQMLFVRINSSLKMNLKRQLTRLGVVNDGGPQHGLVVVDVAFYTEN
VQALKNLETLDLNMAEIWEQKR
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atggcagcccgccccgtctcctcgccagtgcctcggcccgccgtcccagatgggctctac
cgcaaggagcgggacccctcgtcgccctgcccctctccctcctcctcccggcgtcggccg
gtccgctcgctgcccgacgtgtgccccaaagagcccaccggcgatggacggggcctacgc
gagggtccgtccgtggtctcggagcacgaccgctggacggtttacagttccaaggtcaac
ctgccggcggccctcaacgacccgaggctggccaaacgcgagtcggacttcttcaccaag
acctggggtttggattttgccgagacggaggtgatgccgtccttctgcctcggcaacatc
acgcaggaacacttccgcgcgtaccttcaggagagcgcgcagagggaacgaatccacgaa
cgatgcaagactctttgtccagtcaaagacgactttgcggacgccatctatagcgtcaac
agcaaccaagaaaagtcaagagcagagttggaccaagttcccaagattttcctgaaaccc
gactttgccctggaggagcccgtgacctttaacgccgtcctgccgtggtcgcacttcaac
ggcggcgggcgcagcaaccgtgacgtggcctcctccaaactgctgcaagagaagctgagt
cactacctggatgtggtggaggtgagcatcgcgcggcagatctcgctgcgctccgaggcc
tttttccacgccatgtcgtctcagcacgagctgcgggaccgcctaaaggagacgcaggag
gcggtggccgttctacggcgccgcaccgccgccatcgaccgcatcatgtgccagggcccg
ctggcggccctgcgcgccgccctggcgcgcaacaactgcgtcaagctacacggcaagcta
aagctaatggcggccgtgcaccagacgcagcccaccgtgcagctgctactctccacctct
gagtttgtgggagcgctggagctcatcgccaccaccaaggaggtcctgcagcaggagctg
caaggcatccacagcttcagacatctgggctctcagctgtgcgagctggagaagctgatt
gacaagatgatggtggaggacttcagcatgtacgcacgcagcgagctcaaccgcagcctg
agggacgacacgcagctcctggagaaggaacgtcttcagtcactggtgtttggcctgctg
cgccagagaaagttggactttttggacatttacggcgacgagatgattgcagcggccaag
gccatcgtgtcccagtgcgtcgccgagcggctcctgtccatcgacgacatcgacacggaa
gtcgtcaccaagttagccgagcagatgcgtctgatgaccttccctcagtggtttgagttc
ctcaaggacgtctttgactgcttcctgcttttcctccacaggatgaaggccacgctcggc
gtgatccgctcggtggtcttagaggttctggaatccgcccggaagaattcctcggcggcg
aagtcccacccggagcagcttcggtctcacgaggcggccggcacgtgcggggacgtcgcc
gagttggcctacctcacgcacgacggcccctttatcagcgacgccctccacggcgcccag
cgagccggaacgacgacgccgccggggacgccggacgctgactcggcatctggagaccag
aacttcatgtacaacagcgccggcgacacgatgccgtccgacttggagctgaaccgcgtg
ctcaacaacatccaggagcttctgcacgccgcctccgacatcagccacgatcgctgcgtc
aagatcctcaccgccagagccaaggacggttctctggagcgcatcagctcgggcgagttt
gtggacctctcggtggcggtggagtccttcgccaaggacacggaggagctgtgcggcagg
cgcagcgtgtccctgcggggggcgctgcagagtcaggccgaccgcttcgtccaccgcttc
cacgaggagcgcaagaccaaactcagtctcctgctggataacgagcgttggaagcaggcg
gaggttcctgccgagtttcaggagctggtcgactccatggcggacggcaccattgcgctc
gccgtgcgcaaagcagcaggtagccagccgccagcacgtacactttgttcaaagataacg
ccgtttcaccacatggcaggtccagatgagaggaagccgggcgacttcctgctggtgaag
gggaacaagtacgccgtggtggggacggtgctgctcctcatccggatctttctggagtac
tgccagtgcgtcaacgacatcccggccatcgccaccgacatgttgatgcggctggctgac
ctcctcaagcacttcaactctcgcagttgtcagctggttctcggcgcaggagctctgcag
gtggtcggcctcaagaccatcaccaccaaaaacctcgcgttagcctcacgctgcctgcag
ctggtggtgttctacattcctgtcatacggcaacattttgagagcaaactccagcccaaa
cacttgagcgtcctcagacactttgaccacatcatcaaggactataacgaccacgtgtcc
gaaatctgggccaagctggtggccatcatggacagcgtgtttgagaaggtgctgaccaag
tatgaggtgaaggccccgatgccgtcggcgtgtttccgtaacgtgtgcaagcagatggtc
aagatgcacgaggccatcaacgacctcctgcccgccgagcagacgcagatgctgtttgtc
cggatcaacagcagcctgaagatgaacctgaagaggcagctgactcgactcggcgtggtc
aacgacggcgggcctcagcacgggctggtggtggtagacgtggccttctacacggagaac
gtccaggccctcaagaacctggagactttggacctcaacatggccgagatctgggagcag
aagaggtga
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