Syngnathus scovelli (Gulf pipefish): 125969367
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Entry
125969367 CDS
T08785
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
125969367 (taf5l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sscv03021
]
125969367 (taf5l)
03036 Chromosome and associated proteins [BR:
sscv03036
]
125969367 (taf5l)
Transcription machinery [BR:
sscv03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
125969367 (taf5l)
Coactivators
SAGA/TFTC/STAGA complex
125969367 (taf5l)
Chromosome and associated proteins [BR:
sscv03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
125969367 (taf5l)
STAGA complex
125969367 (taf5l)
TFTC complex
125969367 (taf5l)
SAGA complex
125969367 (taf5l)
SLIK complex
125969367 (taf5l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
TFIID_NTD2
WDR55
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_EIPR1
Beta-prop_HPS5
Beta-prop_SPT8
Beta-prop_WDR19_1st
WD40_like
PEP5_VPS11_N
PROPPIN
WD_LRWD1
Beta-prop_DCAF12
Motif
Other DBs
NCBI-GeneID:
125969367
NCBI-ProteinID:
XP_049577258
LinkDB
All DBs
Position
5:1189367..1192825
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AA seq
605 aa
AA seq
DB search
MKRVRNEQIQYVVAQYLKRRQYVDSTDGSLKAAKLFQTAEEMAASLTVQSESGCANVVSA
VPCQSDPQQYESQYARLRCFLSEADISWAKEVSALLFPLFVYLHLDMVRCGLKSAVDGFY
ARFHAAFLQDSDQRATVEQLRNVFSTPDVAASPRLAAFLEHKYVVRLSEGAHGYLLRYLQ
SDDNGAICKVLGAHLQLEVSASKRTDYQLYGAAVGTAPSAGAPNSIRAGADGGEEGVEAA
AEPLPAGAPQNEAALEALRDCIKKVREGPPSLTTVCFYAFHHTERLLNTAEVSPDSRLLA
AGFDNSAVKLWSLRARKLKARPHVTDVSRVHLACDVLEEEMDEEDTSGSEVKMLRGHSGP
VFRTAFLTDSSGLLSCSEDTSVRYWDLGSFTNTALYQGHAYPVWDVAVSPCSLYFASGSH
DRTARLWTFSRTYPLRVYAGHLADVDCVGFHPNSNYLATGSSDKTVRLWSTQQGASVRLF
TGHRGPVLALAFSPNGKYLASGGEDQRVKLWDLASGALFKDLRGHADSVTGLSFSPDSSL
VASSSTDNTVRVWDVRGSQGAAPPDGSSAELVGSYAGNTGNVLNVQFTACNLLLVTGSAR
DKTEA
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgggtccgcaatgagcagatccagtatgtggtggctcagtacctcaagcgcaga
cagtatgtggactcgaccgacggctccctgaaagccgccaaactcttccagacggctgag
gagatggctgccagcctcactgtccagagcgagtcgggttgtgccaacgtggtgtctgcg
gtgccgtgccagtccgacccgcagcaatacgagtcgcagtacgccaggctgcgctgtttc
ctgtcagaagccgacatctcatgggccaaggaagtgagcgcgttactcttcccgctcttc
gtctacctccacctggacatggtacgctgcggcctcaagtcagcggtggacggcttctac
gcgcgcttccacgccgccttcctgcaggacagcgatcagcgcgccacggtggaacagctg
cgcaacgtcttcagcactcccgacgtggcggccagcccgaggctcgccgctttcctggag
cacaagtacgtggtgcgcctcagcgagggcgcccacggctacctgctacgctacctgcaa
agcgacgacaacggcgccatctgcaaagtcctcggagcgcacttgcagctggaggtgagc
gcctccaagcgaaccgactaccagctttacggggcggcggtcgggacggccccctccgcc
ggcgcccctaactccatccgggcgggagcggatggcggcgaggaaggcgtcgaggcggcg
gcagagccgctgccggcgggcgccccgcaaaacgaggcggccctggaggcactgcgcgac
tgtatcaagaaggtccgcgagggtccgccctcgctcaccaccgtgtgcttctacgccttc
catcacacggagcgactgctcaacaccgccgaggtgtcgcccgacagccgcctgctggcc
gccggcttcgacaactccgccgtcaagctgtggagcctccgtgcccgcaaactcaaggcc
aggccgcacgtgacggatgtgtcgcgggtacacctggcctgtgacgtcctggaggaagaa
atggacgaggaggacacgtcgggcagtgaggtcaagatgctgcgtggccacagcggcccc
gtgttccggaccgccttcctgacagacagctcgggcctgctgtcttgctccgaggacacc
agcgtgcgctactgggacctgggcagcttcaccaacacagcactctaccagggccacgcc
tacccggtgtgggacgtggccgtgagcccgtgcagcctctacttcgccagtggctcgcac
gaccgcaccgcccgcctctggaccttttcgcgcacatacccgctgcgcgtctacgccggg
cacctggccgacgtggactgcgtgggcttccaccccaactccaactacttggccaccggc
tccagcgacaagacggtgcggctgtggagcacccagcagggggcctcggtgcgcctcttc
acgggccaccgcgggcccgtgctggcactggccttctcgcccaacggcaagtacctggcg
tcgggcggcgaggaccagcgcgtcaagctatgggacctggcctcgggggcgctcttcaag
gacctgcggggtcacgccgacagcgtcaccggcctgtccttcagccccgacagcagcctg
gtggcgtcctcgtccaccgacaacaccgtacgggtgtgggacgtgcgcggctcgcaaggc
gcggcgccgcccgacggctcgtccgccgaactggtgggctcgtacgccgggaacaccggc
aacgtgctcaacgtgcagttcacggcctgcaacctgctgctggtgacgggcagcgcccga
gataaaaccgaagcttag
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