Syngnathus scovelli (Gulf pipefish): 125969441
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Entry
125969441 CDS
T08785
Symbol
topbp1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
125969441 (topbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sscv03032
]
125969441 (topbp1)
03400 DNA repair and recombination proteins [BR:
sscv03400
]
125969441 (topbp1)
DNA replication proteins [BR:
sscv03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
125969441 (topbp1)
DNA repair and recombination proteins [BR:
sscv03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
125969441 (topbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
125969441
NCBI-ProteinID:
XP_049577457
LinkDB
All DBs
Position
5:complement(15493040..15566802)
Genome browser
AA seq
1506 aa
AA seq
DB search
MLSTMSKEYAEGFIVKFVGSKGHMSEYAAKAYEAIMELQSEKYIKMIDEDAVLKMDQKDK
SLFIFTDFDTPAFQHCKNLGCRIVSPLVVVFCLQQQHCVPKADKPVYNMAMVNVTISCTS
LDKTARAEVMDLVQLMGGRVYLDLNVSVTHLIAGEVGSKKYLVAANLGKPILLPSWVKAC
WEKSQNSLFRYTDLPMEEHLCPVLRGCTVTVTGLSSIERKEVQRLCEQHGGRYTGQLKMN
ECTHLIVSQPFGQKYECARKWNVYCVSLRWLFDSIEKGSSQDERHYVVEHSASKSTRPNT
STPSGSGKKEESSVLGLSRISLNTSETVNDTAFTNGTVSHMEAPDPLDSLDLTVRPAEDL
LDGCKLYLCGLPVKKLDMLRRLVSAAGGLRFNQPSEELTHVVSGEPDQDLKTFLSKATHR
PHVVTVQWLLDSFSEGRVLPEESFLHPDCLPPSPAEVLIPLACRPAASRLSVGPPAASPS
TPRINQVEEDLLSQYMDDDPTVIDELPPAQSDGGMSANPATKNSRTLSRSARPESDSSLH
EASKAGLFAGKRFLLQGLGAEAEAQLSLLVTENGGRVLVSRTHTIADYAVVPLLGCSVEA
TVDEVVTDTWLAMCVERECLLELSLNPLFTPVVVMNGRFPLKDCVLSVSQFMGAERESVV
ELAKHLGATVQDYFVRLANPKKAMLASTHLVLQSPDGTKYQAAKKWGLPAVTMHWIMASA
RTGQRAAEECFLIDLPPFPEREEESFFGASQKMSVPPLPQPPACFSPEVPLLGPQSGKAV
TPLDLGRFQSKVFRSVLDEMKSHEDIGTPKQSQEGGRRKPLGNERSLQLDTPSRFLSKDQ
LFRPSFNVKDALAALDTPGGTGEKTETPLTDVINRNLKVALANSTRGSHLADMQAVTSSP
QLSIARKEHLKVAKEVAGPLTDVVICVGKKLSKMQSELNAVAASLGAEYRWACDESVTHF
IYQGRASDNSREYRGVKERGLHVVSQHWLQACAEEQRHVPESLYPFTYNPKMSLNLSQVP
SSSQRSPSCTRTQLQENTESKPEHKVAEDASTSRRASDESREQDHLTDKNEVTETLQMRE
NLQKALQEIMSATKMTTGRRPSLRLCRTGSTDSTPNTSAVSRRTLEALRVSRAAALDVNA
EPSQSEQIVWDDPTAREERAKLADNLQWPGNPSQHSEPLAPPPRALAQYDRQLSDSMTDS
ELVQMAACDVIDQQMSKKATELPTAEPQSNIMTPDAHRIAFPLTKPMIAPETKKETRTPP
RFQMSSLAPQERIDYSHLIEELGGIILDKQSFDPTCSHIIVGTPLRNEKYLAAMAAGKWI
LHRSYLEACRSVGRFIPEEDYEWGSSSILDALPSISSQQRRLALAAMRWRKVLRGPSEQG
GAFSGWTVMLNIDQGREAGFRRLLQSGRAKVMLSASPSMYKEATHLFADFSRLRPGDFRV
DVSDASAQGVMCLKPEYIADYLMQDPIPPMALYLLTERHPEEAPGTQSLKRRTAEHSSRP
KKSRLL
NT seq
4521 nt
NT seq
+upstream
nt +downstream
nt
atgttgtccactatgtccaaagaatatgctgaaggcttcattgtcaagtttgtgggaagt
aaaggacacatgtcagagtatgctgccaaagcttatgaggctattatggaactgcagtct
gaaaagtacatcaagatgattgatgaagatgctgtgttaaagatggaccaaaaggacaaa
tctttgtttatcttcactgactttgacacacccgccttccagcactgcaagaatctcggg
tgtcgtattgtgagtccgctggtggtggtgttctgcctgcagcagcagcattgtgtgccc
aaagcagataagccggtctacaacatggccatggtcaacgtcaccatctcctgcaccagc
ctggataaaacagcccgggctgaggtgatggatctggtgcagctgatgggcggtcgcgtc
tatctagatctcaatgtgtctgtcacccaccttattgccggcgaagtaggcagcaaaaag
taccttgtggccgccaacctgggaaaacccatcctgcttccttcctgggtcaaagcatgc
tgggagaagtctcaaaacagtctgttcaggtacacagatctgcccatggaggagcacttg
tgtccagtgctccggggctgcaccgtgactgtgacgggtctctccagcattgaacgcaaa
gaagtgcaacgtctgtgcgagcaacacggtggccgctacacgggccagctcaaaatgaat
gagtgtacccacctcatagtcagccaaccctttggtcagaagtatgagtgtgcgcgtaaa
tggaacgtgtactgcgtgtctctgcgctggcttttcgacagcatcgaaaagggctccagt
caggacgagcgtcactacgttgtggagcacagcgcctccaaaagcacccggccaaatacg
tccacgccctccggctccggcaagaaggaagaaagttctgtgctgggtttgagtcgcatc
tccctcaacaccagtgagacagttaatgacacagccttcaccaacggaaccgtcagccat
atggaagctccagaccctcttgacagtctggatctcactgtgcgtcctgcagaggatctc
ctggacggctgtaagctctatctgtgcggcctccccgtgaagaagctggacatgttgcgt
cggctggtaagcgccgcgggaggtcttcgcttcaaccagccaagcgaggagctcacacat
gtggtctcaggagaaccagatcaggacctcaagacttttctgtctaaagcgactcacaga
cctcacgtagtgacagtccagtggctgctagacagcttctccgaaggccgtgtcctcccg
gaagaaagcttcctccacccagactgtctgcctccctcaccggcagaggtgttgattcca
ttggcgtgtcgcccagccgcctcgaggctttcagtgggaccccccgccgccagtcccagc
accccaagaattaatcaagtggaggaggacctcctctcacagtacatggatgacgacccg
acagtcattgatgagcttccaccagcccaaagtgacggcggaatgtccgccaacccggcc
accaagaattccaggaccctcagccgcagcgccaggccagagtcagattcctctctgcat
gaggccagcaaggcaggtctatttgctggaaaacgcttcctgctgcagggcttgggcgcc
gaagccgaggcccagctctctctgctggtgacggagaacggaggccgggtgttggtgagc
cgcacgcacaccatcgccgactacgccgtggtgcctcttttgggctgttctgtggaggct
acggtggacgaagtggtcactgatacgtggttggccatgtgtgtggagagggagtgtctc
ttggagctctcgttgaatcctctgttcactccggttgtcgtgatgaatggacgtttccca
ctcaaggattgcgtcctttccgtcagccagttcatgggagctgagcgtgagtcggtggtg
gagttggccaagcacctgggagcaactgtccaggactactttgtgcgcttggccaacccc
aagaaagcaatgctggccagcactcacctggtgctgcaaagccccgatggcactaagtac
caggcagccaaaaagtgggggctccctgcagtcactatgcactggatcatggcgtctgcc
aggaccggccagagggcagccgaggagtgctttctgattgacctgcccccttttccagaa
agggaggaggagagttttttcggcgcctcccagaagatgtctgtgccgccgctgccacag
ccaccagcatgcttctctccagaggttccactactgggtccacagagtggcaaggcagtc
acgccgctggatttaggacgcttccagagcaaagtgtttcgttcggtgctagatgagatg
aagtctcatgaggacattggcacgcccaagcaaagccaggagggcggccgcaggaagccc
cttggcaacgagcgctcgctgcagctggatacgccctcacgcttcctcagcaaggatcag
ctcttcaggccctccttcaatgtcaaggacgccttggcggcattggacacgccaggcggg
accggcgagaagacagagacaccactgactgacgtcatcaacagaaacctgaaggtggcg
ctggctaacagcacccgtggcagccaccttgctgacatgcaagctgtcacttccagcccg
cagctcagcatcgccaggaaggagcatctcaaggtggcaaaagaggtggccggcccactc
acggacgttgtgatctgcgtggggaagaagctgagcaagatgcagagcgaactgaacgct
gtggccgcctcactcggagccgaatacagatgggcctgtgacgaaagcgtcacccacttc
atctaccagggccgagcaagcgacaacagtcgggaataccgaggcgtgaaagagaggggg
ctgcatgtggtctcgcaacactggctccaagcctgtgctgaggagcagaggcacgtcccg
gagtctctgtatcctttcacctacaaccctaagatgagcctgaacctcagtcaagttccc
agcagctcgcagaggtctccgtcttgcacacgaacgcaactgcaagaaaacaccgaatcc
aaacctgagcacaaggtcgcagaggatgcttccacctctcgccgtgcaagtgatgagagc
agagagcaagatcacttaacggacaagaatgaggtcacagaaacgctgcagatgagagag
aacctgcaaaaagcactccaagaaatcatgtcggccacaaagatgacaactggcaggcgg
ccgtcgctacggctctgtcggacggggtcaacagactccacccctaacacttctgccgtc
agcagacgcactctggaagcattaagggtctctagggcagctgctctggatgtcaatgcg
gagccttcccagagcgagcagattgtttgggacgatcccacggccagggaagaaagggcc
aagctggccgacaacctgcagtggcccggtaatccctcacagcactctgagcctctggcg
cctcctccgcgggccctggcgcagtacgacagacagcttagcgactccatgactgactcg
gagctggtgcagatggcagcttgtgacgtcatcgaccagcaaatgagcaagaaagccaca
gagctcccgacggcggagccacagagtaacatcatgactcctgacgcccacagaatcgct
ttcccactcaccaagcccatgatagctcctgagacaaagaaggagaccaggacaccaccc
agattccagatgtcttcacttgctcctcaggaacgcattgattacagtcacctcattgaa
gagcttggtggcatcatcctggacaagcagtcctttgaccccacctgctcccatatcatc
gtaggcacaccactgcgcaacgaaaagtacctggcggccatggcagctggcaaatggata
ctacatagatcttacttggaggcctgtcgatcggtgggccgtttcattccggaggaggac
tatgaatggggcagcagttccatcctggatgctttgccctccatcagctcgcagcagagg
cgcttagcgttagctgccatgcgctggaggaaagtcctgcgaggaccctcggaacaggga
ggagccttcagtggctggacggtgatgctgaacatcgaccagggccgagaagctggcttc
aggcgcttgctgcagtcaggcagggccaaggtgatgttgagtgcctctccttctatgtac
aaagaggcaacgcacttgtttgccgacttcagccgcctgcggccaggagacttcagagtg
gacgtgtcagacgcctccgctcagggggtgatgtgcctaaaacccgagtacatcgccgac
tacctcatgcaggatcccatccctcccatggcgctctatctcctcactgagcgtcacccc
gaagaggcacctggcacgcagtcactgaaacgcagaacagcagagcacagctcccggccc
aaaaagtctcgtctgctctaa
DBGET
integrated database retrieval system
