Syngnathus scovelli (Gulf pipefish): 125969447
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Entry
125969447 CDS
T08785
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125969447 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125969447 (patl1)
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125969447 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
125969447 (patl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Metal_resist
DUF3849
Motif
Other DBs
NCBI-GeneID:
125969447
NCBI-ProteinID:
XP_049577478
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Position
5:15220278..15289695
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AA seq
817 aa
AA seq
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MFRFQSLDEDCTLEEEDDGLVEEDEDEIDQFNDDTFGAGAIDDDWQEEHKRLAELDELGE
GLGIGVSVKNESNSGAAEEDSSSTHVTSAAGHFPYHSPFSLPQHSFSSGIHQPDVEDGRR
EGHLAESLARLVLEADPAIAGVGAAERPVFIKNQRLGHDLRPGVLHQPSPISHSPQPHQQ
PHQNQQPPGSSTSGHPPPMLTYQQQQHLLRSAPGSIGQMNSRNIWENSMGFGPVSVSPGL
VTHMEDSPLMSIIKEVGLPKCPSQGRNDGRDLSERVPPPRSSSPVIGSPPVRAVPIGTPP
KQPISHALNHQIHHPTVHVRAPIQHRYPPFPERLSPNTLLNFANSPLCRGPFPPGVGPML
SQIQRAQLLNSQVAGVPRGGPVPPLLPAGGGFRPFFSAPHPTLGHRMGPPHPHGHPNHMP
PIRHNATHLHPQHRRILTQRMQNRSGERSRTGGDWRSRDPYSNLMTQKEKEWVTKIQMMQ
LQSTDPFLDDYYYQHYYEKMEKRQEKERDSSKKEHTTKLITPQVAKIEHTYRPVQFAGSL
GKLTVSSVNNPRKMIDAVVTTRSDDEEKREKQVWNKRRQILYTVEKIYSLLLEVQDFEKR
FVHAPEEDRETLLEQHKTNTMQLCNSLQEKEWDDRVSDERCVMIMSVRKGKRLISRLLPY
LPPSHAATVVMAIARNLPTLAKKDKQDQVLCLLVEPVSAVIMSLSSSALTDLLQELQGSE
GQLAIVLHNKFGVTLLYLILSEGERMQSSDPNCQLMDDNRWTELVFSVTRELLSIPSTSL
SPPLFTPTNLITLFSRFIDRQRLDLLQEKLQIPASSR
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgtttcgatttcagtccctggatgaagactgtacgttggaggaagaagatgacggacta
gtagaagaagatgaagatgaaattgaccagtttaatgatgacacctttggggctggggct
atagatgatgattggcaagaggaacataaacgccttgctgagcttgatgaactcggagag
gggcttggaattggagtgagcgtgaaaaatgaatcaaattcaggagcagctgaggaggat
tcatcgtccacccatgtcacatctgcagcaggccattttccctatcactcacccttctct
ttaccccaacactccttttcctctggtatacaccaaccagatgtggaagatggaagaagg
gaaggtcacttggctgagtcattggcaagacttgtcctggaagctgaccctgctattgct
ggagtcggagcagcagagaggcctgtttttatcaaaaaccaaaggttgggccatgacttg
aggcccggggttctgcaccaaccttcccccatttcacattcacctcaaccccaccaacag
ccccatcagaatcaacagcctcctgggtcctccacctcaggccatcctccaccaatgctc
acctaccaacagcagcaacatttacttcgttctgcaccaggttccattggccagatgaac
tcacgcaatatctgggagaacagtatggggtttggaccagtcagtgttagccctggatta
gttacacacatggaggatagtccattaatgtcaataataaaagaggtgggacttccaaaa
tgtccatctcaggggaggaacgatggacgggatctgtcagaaagggttccacctccacgc
tcctcttctcctgtgattggctctcctccagtccgggcagtgcccattggaactccgccg
aagcaaccaataagtcacgccttaaatcatcagattcatcatcctacagttcatgtgaga
gccccaatccagcacagataccctcctttccctgaacgtttgtcacccaacactctgctc
aattttgccaactcgccactgtgtcgtggaccatttcctccaggagtcggcccgatgctg
tcacagattcaacgggcccagctcctcaactctcaggtggcaggagttcctcgtggtggt
ccagtgcctcctttgttaccagctggtggtggtttcagaccatttttcagtgccccacac
cctacactcggtcatcgaatggggccgccgcatcctcatggtcatcctaaccacatgcca
cccatcaggcacaacgccactcatctccatcctcaacatcggcgcatacttacccagcgc
atgcaaaacaggagcggagagcgaagcagaacaggaggggactggcgcagcagggaccca
tacagtaacctgatgactcagaaagagaaggaatgggtcactaaaatccaaatgatgcaa
cttcaaagtactgaccctttcctggatgactactattatcagcactactatgaaaagatg
gaaaagcgtcaggagaaagagagagacagcagtaaaaaagagcacactaccaagctcatc
actccacaagttgccaagattgaacacacctacagaccagttcaatttgcaggctctttg
ggtaaactgacagtttctagtgtcaacaatccacgcaaaatgattgatgcagttgtcacc
acgcgctcagatgacgaggaaaagagagaaaagcaggtttggaataaaagacgacagatt
ctatacactgtggagaagatctacagtttgctgcttgaggtccaagactttgagaaacgt
tttgtccatgcaccagaggaggacagggagaccttactggagcagcacaaaaccaatact
atgcagctctgtaattctctgcaagagaaggagtgggatgacagggtgagcgatgaacgt
tgcgtaatgatcatgtcggtgaggaaaggcaagcggctcatttccaggctcctaccctac
ctacccccctctcatgctgccaccgttgtcatggcaattgctcgaaaccttccgaccctg
gccaaaaaggacaagcaggaccaggtgctgtgcctgttagtggagcctgtctctgcggtg
atcatgtccttatcaagctctgccctcacagacttgctccaggagcttcagggcagtgag
ggtcaacttgccattgtactacacaacaagtttggtgtgacgctgctctatctgatattg
agtgaaggagagaggatgcaaagttctgaccccaactgtcagctcatggatgacaatcga
tggacagagctggtgttttctgtaaccagggagttgctcagcattccctctacatccctc
tcacctcctctcttcacacctaccaacctgatcaccctcttctcacgctttattgaccgt
cagcgcttggacttgttacaggaaaaactacagatccctgcctcatccaggtag
DBGET
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