Syngnathus scovelli (Gulf pipefish): 125969506
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Entry
125969506 CDS
T08785
Symbol
zmp:0000001082
Name
(RefSeq) integrin alpha-D
KO
K05718
integrin alpha L
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04514
Cell adhesion molecule (CAM) interaction
sscv04517
IgSF CAM signaling
sscv04518
Integrin signaling
sscv04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
125969506 (zmp:0000001082)
04517 IgSF CAM signaling
125969506 (zmp:0000001082)
04518 Integrin signaling
125969506 (zmp:0000001082)
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
125969506 (zmp:0000001082)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sscv04147
]
125969506 (zmp:0000001082)
04515 Cell adhesion molecules [BR:
sscv04515
]
125969506 (zmp:0000001082)
04090 CD molecules [BR:
sscv04090
]
125969506 (zmp:0000001082)
Exosome [BR:
sscv04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
125969506 (zmp:0000001082)
Cell adhesion molecules [BR:
sscv04515
]
Integrins
Integrin alpha subunits
125969506 (zmp:0000001082)
CD molecules [BR:
sscv04090
]
Proteins
125969506 (zmp:0000001082)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
Integrin_A_Ig_1
FG-GAP
Integrin_A_Ig_2
ITGAX-like_Ig_3
VWA_2
FG-GAP_3
vWA_SIBA-E
FG-GAP_2
DUF5025
vWA_Rv0959
Filamin
VWA_CoxE
Motif
Other DBs
NCBI-GeneID:
125969506
NCBI-ProteinID:
XP_049577620
LinkDB
All DBs
Position
5:13103016..13119832
Genome browser
AA seq
1195 aa
AA seq
DB search
MCVQLCLFLFMWTVALPVSLTFNIDTTNPKVYQGNQKDFFGYKVLQFASGSNKGILVTAP
LHNNGSGAVCKPDDSQTTKCFNPQGLSFEDKELQVKHLGLSIAEDPIHSQFTVCSPYVAH
DCYDNSYLNSVCFKVTEDLQEITSFKPIFQECRKKTVDLVFLFDGSQSMDENDFNKNKVF
ILDIMNSLKNTSIKFAAVQFATSHRTVFNFTDYQNGNAEKKLRAEPHMDSLTNTHQALRF
VLTNLFENKHAGASSDAIKVLVLITDGDPSDEDEDANYVINTYTEKRIIRFVIGVKIKSL
NKVKAIASDPKDKYAYKIENYEGLTGLLENFQEHIFNIEGDNKVARAQDMRNEMSQRGFS
AAFYKDTLILGSVGSNSWRGALYERQAQIETEIEDPQMQMDSYMGYSVSVGQVNGVPLYF
TGAPRFEHVGQIVLFARNGNSWNVSQRINGTQIGSYFGADLCTVDVDSDGNSDFLLVGAP
LFYHPQEKSEGQICVYTLTDEMLLENKSQINASQLSKGRFGTSIASLADLNGDGLRDVAV
GAPLEDANAGAVYIYFGDRHQGIRSVYSQRILGREIKHGMRFFGQAINGNIDLGDDALPD
IVVGSYGAAVVLRSRPIVNAIAHLSFQPKEISIDQFDCSTNTDTILPMVNLTVCFGIVET
TKSKSGSTELGLNISYMLDVDPMRQSHRGFFSQSDSKSRSLTFTDELLEKDKCFLYLIYM
PKCVKDTLSPLSIKLNFSQVDSQRADVVLNADGKTQAVVEVPFERKCKKNDTCIAEIEVD
FNFLTPTLLVAEESYFNMSITIANHGDDSYNTSLTMYYPPGLSYSRMSQILTQATRRTPH
NCDDLEEVFDKTICGISLPVYRSRSTATFQSSFQISTNYQWNDTIAITVVAKSDNNNSTM
SNLTKMLPVQYEIKMAITVKEDTTTYVSFTEEDTGPQKMFIIYKVDNPGWKAFPVNVSLS
FPTKLQYNFEFENYQVFVHQNKSQCKNMAAINSEYCSPEKHCKIIECDTVMLESASSTEF
VLSGDVQFSNLEARAQNKAFLKRYTGDIGEVKFKSMIHIDYDQQRYVLDSSHEQETKGLS
HEKRDAMWNENNPTQKLTEVHVEFIISPDKLFIILTGTGFGLSLLILVTIIMYKLGCFKR
KTVQYYQEQEEEAGLQMGTATQNNGCTSQPGNDVPAEEKTLLEGNQPADTETAPE
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atgtgtgttcagctttgcctcttcctcttcatgtggactgttgcactccctgtgtctttg
acatttaacattgacaccacaaaccctaaagtctaccaaggcaaccaaaaagatttcttt
gggtacaaagtgcttcaattcgcatctggctccaataagggaatacttgtcactgcaccg
cttcacaataatggatctggggcagtatgcaaaccagatgatagccaaactacaaagtgc
ttcaacccacaaggactctcatttgaagacaaagaattacaagtcaagcaccttggactg
tccatagctgaagacccgatacactcgcagttcactgtttgcagcccttacgtggcccat
gattgttatgacaactcctacctgaacagtgtctgcttcaaagtgacagaggatcttcag
gagatcacttcttttaaaccgatctttcaagagtgcagaaagaagactgtagatctcgtc
ttcctctttgatgggtcacaaagcatggatgagaatgactttaacaagaataaagtcttc
atattggacataatgaatagcctcaaaaacacttcaatcaagtttgcagcagttcagttt
gccacatctcacagaacagtctttaattttactgactaccaaaatggaaatgcagaaaaa
aaacttagagcggaacctcatatggacagcctcaccaacacccaccaagccctcagattt
gtattgacaaacctctttgaaaataaacatgctggagcctcatccgatgcaatcaaagtt
ctggttctaatcacagatggagatccaagtgacgaagatgaagacgcaaattacgttatc
aacacctatactgaaaaacgtatcattcgatttgttattggggtcaaaattaaaagccta
aataaagtgaaggctattgcctcagacccaaaggacaaatatgcatataaaattgagaat
tatgaagggctcacaggattactggaaaactttcaagaacacatctttaacatagaagga
gacaacaaagtggctcgggcccaagacatgaggaatgaaatgtcgcagaggggattcagt
gctgcattctacaaggacaccttgattctgggttcagtgggatcaaacagctggcgtggt
gctctgtacgaacgccaagctcaaatagagacagagattgaagatccgcaaatgcagatg
gactcttacatgggatactccgtttctgtgggacaggtgaatggggttccactatatttc
acaggtgcaccaagatttgagcatgtaggacaaattgtactttttgcacgcaacgggaac
agctggaatgtaagccaacgaataaacgggacgcagattggttcctactttggggcagac
ctttgcactgtagacgtggactcggacggtaacagtgattttctcctggtgggagcacca
ctgttttaccaccctcaggagaagtctgagggacagatctgcgtctacacgctaactgat
gagatgctgctggaaaataaaagtcaaataaatgcatcccaactgtccaaggggagattt
ggtaccagcatagccagtcttgcagatctgaatggagacgggctgcgagatgttgcagtt
ggggctcctcttgaggatgctaatgcaggggcagtgtacatctactttggggacagacac
caagggatacgcagtgtttatagtcagagaatcttagggcgggaaataaaacacgggatg
agattctttgggcaggccataaacggaaacattgacctcggagatgatgctctaccagac
attgttgttgggtcctacggagcagctgttgtcttaaggtccaggcccattgttaatgct
atagctcatctgtcttttcagccaaaggaaattagcattgaccaatttgactgctcgacg
aacacagacacgattttacccatggttaacttaacagtctgctttggaatagtagaaaca
acaaagagtaaatcagggtccacagagttaggactaaacatttcctacatgcttgatgtg
gatccaatgagacaatcacatcgaggtttcttcagtcagagtgacagtaaatcaagaagt
cttactttcaccgatgaattgctggagaaagacaaatgcttcttgtacctcatctacatg
ccaaaatgtgtgaaagacacactgtcacctctcagcatcaaattaaacttctcccaggtg
gacagtcagcgtgctgatgttgtcctcaatgcagatggcaaaacacaagctgtagtcgag
gtcccttttgaaagaaagtgtaaaaagaatgacacctgtattgctgaaatcgaagtggac
ttcaacttcttgactccaacattactggtggctgaagaatcttactttaacatgtccatt
acaatagccaatcatggtgacgactcatacaacaccagcttgactatgtactacccccca
ggcctctcctactccaggatgtctcaaattcttacacaggccacaagacgaacgccccac
aactgcgatgatctggaagaagtatttgacaaaacaatatgtggaatcagccttcctgtg
tatcgcagcagatcaaccgcaacatttcagagttctttccaaatctccaccaattatcaa
tggaatgacactattgcaattactgtggttgcgaaaagtgataataacaactccaccatg
tctaacctgaccaagatgcttccagtacaatatgaaataaaaatggcaataacagtaaaa
gaggacaccaccacttatgtgagcttcacagaagaggacacaggcccccaaaagatgttt
attatatataaggtggataaccctggctggaaagcctttcctgtgaatgtgtctctgagc
tttccaactaaactccaatacaactttgaatttgaaaattatcaagtctttgtacatcag
aacaaaagtcagtgcaaaaacatggctgcaatcaattctgaatattgttccccagaaaaa
cactgcaaaatcattgagtgtgacactgtcatgctggagagtgcatcgtccaccgagttt
gtattgtctggagatgtacaatttagcaatcttgaggcgcgtgcgcagaataaggcattt
ctaaaaagatatactggagacattggagaggttaagttcaaaagcatgatccacattgat
tacgaccaacaacgatatgtactggattcttctcatgaacaagagactaaaggactgtca
catgaaaagagagatgccatgtggaatgagaacaaccccacacagaaattgactgaagtt
cacgttgagttcatcatttcgcctgataaactattcataatactcacgggaactggattt
ggactttcacttttgattcttgttaccatcatcatgtacaagctgggatgtttcaagaga
aaaacagtccagtattatcaagagcaggaagaagaggctggccttcagatgggaactgcc
actcagaacaatggttgtaccagccagcccggaaatgacgtgcctgctgaagaaaaaaca
cttcttgaaggcaaccagccggctgacactgagacagcaccggaataa
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integrated database retrieval system
