Syngnathus scovelli (Gulf pipefish): 125969513
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Entry
125969513 CDS
T08785
Symbol
rfx1b
Name
(RefSeq) MHC class II regulatory factor RFX1 isoform X1
KO
K09173
regulatory factor X 1/2/3
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sscv03000
]
125969513 (rfx1b)
Transcription factors [BR:
sscv03000
]
Eukaryotic type
Other basic domains
RF-X
125969513 (rfx1b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BCD_RFX
RFX_DNA_binding
RFX1_trans_act
DUF3156
Spc42p
Motif
Other DBs
NCBI-GeneID:
125969513
NCBI-ProteinID:
XP_049577636
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All DBs
Position
5:complement(9108149..9116418)
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AA seq
899 aa
AA seq
DB search
MVQSTFSGRRGLGKRLATVAPVKARRHSHGSPGDENQATGVNNPNRWCLKGLVAMATSGY
SEDLQPQQTNTVTIASTPASTTPSSTKTAAHFLTGLPLTSGSIASANQSAKTGQDALLSQ
APPTQAQSQKAAVLAAPTQHYISSEIQHTVAQKSNGQNTSSQYIIVTVTEGSAHSNDSLS
ESSSPASGVPTRVVQPVQTTTQQRSVLQTVPQAGKRVQSGHVNNLQSAHINQEVEQVYSS
QVQYVDGGGSDNAFTTSSIRPGGYSFSDSPLYSQTPPASSSNFYEATSSSESDISGSVTS
QTLSSSVAAAAAASGGTSASGSGYVIQGAYLLGGGGGGGGGQSYSSPNSRAPPATVQWLC
ENYEGAEGVSLPRCTLYYHYLLHCQEQKLEPVNAASFGKLIRSVFMGLRTRRLGTRGNSK
YHYYGLRIKSGSPLLRLMDEQQHMAMRQQPFSQKSRVKAVQKTEGIANGTSGGASQQQAG
VVCDISAQVQQYQQFLEASRPLPDFVEMNVQERSLPDGILPEHLKAFQTLYREHCEAVLD
VMVNLQFTLVETLWKSFWRFSQSSEPETLNLHHESEKRLPKSCLVLLCKFEPVLNWTRTC
DNLLYQTLVEILIPDVLRPIPSALTQAIRNFAKSLESWLSGAMMNIPEEMVRIKVVCVGS
FSQTLRRYTSLNHLAQAARAVLQNSAQINQMLSDLNRVDFTNVQEQASWVCQCEDQIVQR
LEQDFKMTLQQQNSLEQWASWLDGVVSQVLKPYEANPVALPKAAKVFLLNWSFYSSMVIR
DLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPVAVMGEFASTVKSRSTPDLE
KDEEDDDEDEESEEESADLVLQSSSLSMLEDKELLEPPAKQPRTTLSLHSLTETHNTPA
NT seq
2700 nt
NT seq
+upstream
nt +downstream
nt
atggtccaatcaacatttagtggtaggcggggcttaggcaagaggctagcaacagttgcc
ccggtgaaggcaaggcgccatagtcacggtagtcctggcgacgagaaccaagcaacggga
gtcaacaacccgaataggtggtgcctcaaaggattggttgccatggcaacttctggctac
tcagaagacctccagcctcagcagaccaacacggtaaccatagcatcaactccggcttcc
accacaccctcttccaccaagacagcagcacacttcctgaccggactcccactaacctct
ggaagcattgcatcagccaatcaatcagccaaaactggacaggatgcacttttgtcccaa
gctccacctacccaggctcagagccagaaggcagctgttctagcggctcctacacagcac
tatataagctccgaaatccagcacactgtggcccagaagagtaatggtcagaacacctca
tcccaatacatcatagtgacggttacagagggttctgcgcactctaatgacagtctgtca
gaatccagctcacctgcctcgggtgtgcctacacgggtggtccagccagtgcagaccact
actcagcagaggtcagtgttgcagacggtgccacaggctggcaagagggttcagtcagga
cacgtcaataatctgcagtctgcgcacatcaatcaagaggtggagcaggtgtactcgagc
caggtgcagtatgtggacggaggaggctccgacaatgctttcaccacctcctctatccgg
ccaggcggctactctttttccgactcacccctttactctcagacccctcccgcctcctcc
tccaacttctacgaggccacgtctagctcggagtccgacatcagcggctcggtgacctca
cagactctctcctcctctgttgcggcagcagctgctgccagcgggggcacctctgcgagt
ggctccggttatgtcattcagggggcttatttgttaggaggagggggaggaggtggagga
ggacagagctactccagcccaaattcacgtgcccctccggccaccgtgcagtggctgtgt
gagaattacgaaggtgcagagggggtgagtctgcctcgctgcaccctctactaccactac
ctgctacactgccaggagcagaagctggagccggtcaatgccgcctcctttggcaaactc
atcaggtccgtcttcatggggctccgcactcgaaggctcggcacgcgggggaactcaaag
taccactactatggactcaggatcaaatctggctcccctctgctcagactgatggacgaa
cagcagcacatggcaatgcggcagcagccgttctcacagaaaagcagggtaaaggcggtt
cagaaaacagaggggatcgccaatgggacctcagggggggcgtcccagcagcaggcagga
gtggtttgtgatatttcggcccaggtgcagcagtaccagcagttcctggaagcatcacgt
ccgttgcctgatttcgttgagatgaacgtgcaagagcgcagcctgcctgatgggatcctg
cctgaacaccttaaggcctttcagacgctctacagggaacactgtgaggccgttttagac
gtgatggtgaaccttcagttcactcttgtggagacactttggaagtccttctggaggttc
agccaaagcagcgaaccagaaactctcaatcttcaccatgagtcggagaaacgtctgcca
aaatcatgccttgtgctgctgtgcaagtttgagcctgtactaaactggacaagaacgtgc
gacaacctgctctatcagacgctggtggagatcctcatccctgatgtgctccgacccatc
cccagtgccttaactcaggccatccgtaattttgctaagagtctggagagctggctgtcc
ggcgccatgatgaacatcccagaagagatggttcgcattaaggtggtgtgtgtcggctct
ttttcccaaacgttgcgtcgctataccagcttgaaccacctggcccaggcagcccgtgcc
gttctccagaactcagctcagatcaaccagatgctctctgacctcaaccgtgtagatttc
accaacgttcaggaacaagcgtcgtgggtgtgtcagtgtgaggatcaaatcgtccagcgg
ctggagcaagacttcaagatgaccctgcagcagcagaactccttggagcagtgggcctcg
tggctggacggcgttgtctctcaggtgctcaaaccttacgaggccaaccccgtcgccctg
cccaaggccgccaaagtctttctgctcaactggtccttctatagttcgatggtcattcgg
gacctgaccctgcgcagcgccgccagcttcggatcctttcacctgatccgcttgctgtac
gatgagtacatgtactacctgatcgagcacagagtggctcaggcgaaaggagagacccca
gttgccgtcatgggagaatttgccagcacagtcaagagccgatccactccggacctggag
aaagatgaggaagacgatgatgaggatgaggagagtgaggaggaaagcgcagatctggtc
ttgcagtccagctctctgagcatgctggaagacaaggagctgttggagccgcccgccaag
cagcccaggaccactttaagcctgcacagtctgacagagacgcacaatacaccggcttag
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