Syngnathus scovelli (Gulf pipefish): 125969567
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Entry
125969567 CDS
T08785
Symbol
helz
Name
(RefSeq) probable helicase with zinc finger domain isoform X1
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125969567 (helz)
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
125969567 (helz)
3'-5' decay
Other 3'-5' decay factors
125969567 (helz)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_19
zf-CCCH
AAA_30
UvrD-helicase
ResIII
PAM2
zf_CCCH_4
Mov-10_helical
AAA_22
AAA_16
PhoH
AAA_7
zf-CCCH_4
Mg_chelatase
Bac_DnaA
TPR_1
MOV-10_Ig-like
Motif
Other DBs
NCBI-GeneID:
125969567
NCBI-ProteinID:
XP_049577744
LinkDB
All DBs
Position
5:complement(7692784..7718540)
Genome browser
AA seq
1998 aa
AA seq
DB search
MADRRAEKSCEEASRSLVRRDYEAVVSHSTDTLAVLAPQVQSTGAPLSPNPPSGSLRNRA
LLYRIAAFLQLKKYDEADQDCKHVLAEDRTAGDSLLQASLNSMQLDGSLQDVASILSKAL
FGEPTNGIVAKDISRLKILFSEIEAIKKSEMAPEYTDDQEEEVQDGWQFRPPPRGVTSSE
EYTLCKRYLEQGLCRYGAQCTSAHSQEELMEWQKRYASRLIRLKQQQESKHFTENYMETL
IEKWMNSLSPEKVLSDCLEGVAVETSSSLSLTVTTKKSFHSWTFSLLCKPPRKLYRIALL
YDAHRPHFSITGVSAGEQIQTVSAGSQEWTPQKETAVAADNGIDHCVYKVTVDFTTEIFG
TFRQTIVFDFGSEPVLMQRIMVDAASIEDIEHLMAARQQLLMTAKRWDSSCKTLVGFTPN
ETMCDLERSLLSRYQIPLSADQLFTQSVLDKTLTRENYQARLHDLLYIEEIAQFKEVSKF
NIKVSLQLVSSFMLTGISVGAKYAQNGQLFARFKLTKTLSEDTLAGRLVMTKVNSVLFLP
LGLEGFSSQPPPGVKERVYEAVIEEKTKEYIFLRICKDCCDELGLLPDRKLQVELQFQLN
RLPLCEMHYALDRIKDSKDNSILFPDVSLVPTIPWSPNRQWDEQLDPRLNAKQKEAILAI
TTPVTIPLPPVLIIGPYGTGKTFTLAQAVKHILRQETSSRVLICTHSNSAADLYIKDYLH
PYVEAGNPHARPLRVYFRNRWVKTVHPVVQQYCLIANTQVTFKMPTRDDILRHRVVVVTL
STSQYLCQLDLEPGLFTHILLDEAAQAMECETIMPFALASSTTRIVLAGDHMQLSPFVYS
EFARERNLHVSLLDRLYEHYPSEFPCRILLCENYRSHEAIINYTSELFYDGKLMASGKQP
CHKDFYPLTFFTARGEDVQEKNSTAYYNNAEVFEIVERVEELRKKWPVAWGKLDEGSIGV
VSPYSDQVFRIRAELRKKRMHEVSVERVLNVQGKQFRVLFLSTVRTRHTCKRKQTAIKRK
EQLVEDSTEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSVGRCRKFWEHFVSICH
ENSSLHGITFEQIKTQLEALELKKTYVLNPLAPEFIPRALRPLQGHPPSQALHPHHHPHP
QHVQTSSTKQAQQQQQQSPPKGKHANHTEHLPPEGYVQPNPAVLMGNPIQAFTPPVGAAP
AGLGKSPSPVQRIDPHTGASILYVPAVYGGNMVMPVPLPLPWPSYQNRFAVDPRIMSHQA
AMAYNFNLLQAQNRGSPIPCSGVVHPSPLGVGQPSPDTDLQSDAVRNGKLEGCPKSEQTP
ERKNTEIKDKQGDFDTGRSLESQPDGIAGFPNALLHRKDPSAGQRALNYHLAPPNPAFPT
HPVSGRSLPQQCPVSRLPYRVNQPQHPPMVQQSQLSPAFPGGGHSASFFSGNIAPHRAIQ
SPTLDVPESGSVEEMGGSIRTSVAHLGGHHPNLSQHHNRVSSFGEEGQDAPHSDGHDLRR
PLALEVLNQQQQAARLGQWNEAAGPFLPGGVTFPLPQQNPHLAQPPMTRFSHPLHRAASW
ALGANIEDDANSTGPPFNRYTGLLREIPQHESPETREASEIQPPPQSRLLQYRQSRASAD
PSSSLAATSNHAGPFPSGPYHHESGRDHLNNNNVLNNSALQQHTVGNSLYNSSCYQTPAH
PASPPASQVKYLLQETQWSHGGGTSVSPPQQSHLLGNQAHGLPYGLPIMAPPSRQEQVHL
MQLHHQQQQHQQQQQQQQSQDQESYQSLSPRTSATTALHSVDEYEPRGPGRPLYQRRISS
SYPDQPSLANSHNAMSQQSQSCAGDRNQDHLHPHIQQQQQQHPPPPYSYPSHELWPSNGG
GPGPFQNIPCNGGGTLTHHRELLASKALRQMEEQVKAEPPAAQQTHPHTLNSLQHPGQFP
PLMSNKQQPQQAPAEPVQAAPNLNKPPTMSYASALRAPPKPRAIRPEQAKKNSDPLSLLQ
ELTIGSSDGSNGYYSYFK
NT seq
5997 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaggagagcggagaaatcatgtgaagaagccagcagatccttagtcaggcgg
gactatgaggcagtagtgagccatagcacggacaccttggcggtcctcgctccccaagtc
caatccacaggcgccccactctcaccgaacccgccttccggaagcctccgcaatcgcgcc
ctgctttaccgcatcgctgcctttcttcagttgaaaaaatatgatgaagcagatcaagac
tgcaaacatgtcctggcagaagatcggaccgcgggagacagtttgctccaggccagcttg
aattctatgcagttggatggcagcctgcaggatgtggccagcatcctttctaaagccttg
tttggagagccaacgaatggcatcgttgcaaaggacatatccagattaaaaattctgttt
tcagaaatcgaggctataaaaaagagtgagatggcacctgaatacacagatgaccaggag
gaggaggtacaggatggctggcagtttaggccccctcctcgaggagtcaccagcagtgaa
gagtacacactctgtaaaaggtacttggagcagggtctgtgtcggtatggggcccagtgt
acgtcggcccactcgcaggaggagctaatggaatggcagaaacgctacgcgtcgcgcctc
atccgtctcaaacaacagcaggagagcaaacactttaccgaaaattacatggagacacta
attgagaagtggatgaactctctgtctccagagaaagtgcttagtgattgtttagaagga
gtcgctgttgaaaccagctcaagcctctctctaactgtcaccaccaaaaaatccttccac
tcttggaccttctcactgctctgcaagcctcccagaaagctatatcgcatagccctgctc
tacgatgcccacagaccacatttttccatcacaggagtttctgctggggagcagatccaa
actgtgtctgctggctctcaagagtggactcctcaaaaagaaactgcagtggcggcagac
aatggcatagaccactgtgtctacaaggtcaccgtggacttcacaacagagatctttggc
accttcagacagacaatagtttttgactttggctcggagccagtgctgatgcaacgaatc
atggtggatgctgcctctattgaagatattgaacatctgatggcagctagacagcagctc
ttgatgactgccaaacgttgggactcttcctgtaagactttagttggattcacacctaat
gagaccatgtgtgatctggagcgcagccttctttcacgctatcaaatcccactgtcggcg
gaccagctctttactcagtcagttctagacaagactctgaccagagaaaactaccaagcc
cggctccatgaccttctctacatagaggagattgcacaatttaaagaagttagcaagttt
aacatcaaagtaagcctgcagctggtatccagcttcatgctaactggcatttccgttgga
gccaagtatgcccaaaatggacaactttttgcacgttttaaacttacaaaaacactgtct
gaggacacactggctggacgactagtgatgaccaaggtgaattcagttctcttcctgcct
ttgggcttggagggcttcagcagccagcctcctccgggggttaaagagcgtgtctacgaa
gctgtgattgaggagaagaccaaggaatacatcttcctcaggatttgcaaagactgctgt
gatgaacttggactactgcctgacagaaaactccaggtggagctccagttccagctgaac
aggcttccactgtgcgagatgcactatgccctggatcgcatcaaagatagtaaagacaat
agcattctcttccctgatgtaagccttgtcccgaccatcccctggagccctaacaggcag
tgggatgaacagctggatccacgtctgaatgccaagcagaaagaggccattttggccatc
acgacccctgtcactatccccctgcccccagtcctcattattggaccctatggcactggc
aagacattcactctggcacaggctgtcaaacacatcctccgccaggaaactagcagcagg
gttctgatctgcacccactccaacagtgcagctgacctttacattaaggactaccttcat
ccttacgttgaagcaggcaatccacatgccagacctctcagggtatactttaggaaccgc
tgggtgaagacggtccacccagtggtccagcagtactgtctcatcgccaacacacaggtc
acttttaaaatgcccacaagagatgacatcctcaggcatcgtgtggttgtggtcaccctc
agcacttcccagtacctctgccagcttgacttggaacctggcctgttcactcatatcttg
ttggatgaagctgcccaggccatggagtgtgagacgatcatgccttttgccttagctagc
agtaccacccgcattgtgttggctggagaccatatgcagctgagtccatttgtgtacagc
gagttcgcccgtgagcgaaacctgcacgtgtccttgttggacagactatatgaacactac
ccttcagaattcccgtgccgcatccttctgtgtgagaactaccgctcccatgaagctatc
atcaactacacgtcagagttgttttatgatggcaagctgatggcaagtggaaagcagccc
tgtcacaaagatttctatcctctaaccttcttcactgcacgaggagaagatgtccaggag
aagaacagcactgcctactacaacaatgctgaggtgtttgagattgtggagcgtgtggag
gagttgcgcaagaagtggccagtagcttggggaaagctggatgagggtagcatcggagtg
gtttcgccgtattcggaccaggtctttcgcattcgggccgagctccgaaagaagagaatg
catgaagtcagtgtggaaagagtgctcaatgtccaaggtaaacagttccgggtcctgttc
ctaagcacggtgcggacgcggcatacctgcaagcgcaaacaaacagccatcaagaggaag
gagcagcttgtggaggattccactgaggacctggactatggatttttgtccaactacaag
ctgctcaacacagccatcaccagagctcagtcgctggttgcggtcgtgggagacccaatt
gcactgtgctctgttggacgctgcagaaagttctgggagcattttgtttccatctgccat
gaaaactcaagcctccatggcatcacctttgagcaaataaagacccagttagaggccctg
gagctaaagaagacctatgttctcaaccctctggctccagaattcatcccccgtgccctc
aggcctctgcaagggcacccgccttcacaggccctacatccccaccaccatccccatcct
cagcatgtgcagacatcctccacaaaacaggcacagcagcaacagcagcagtcaccacct
aagggcaaacatgccaaccacacagagcaccttccacctgaaggttatgtccagcccaac
ccagctgttctaatgggaaacccaatccaggcatttacaccccccgtgggtgccgcccca
gctggcttgggcaagtcaccaagtcctgttcaaaggatagaccctcacacaggcgccagc
atcctttacgttccagcagtatatggtggaaacatggtcatgcctgtgccgcttcctttg
ccatggccaagttatcagaaccgctttgctgttgaccctcgaatcatgagccaccaggca
gccatggcctacaacttcaacctcttgcaggcccagaatcgaggctctcctattccttgc
agtggagtggtccatccctctccccttggagtgggacaaccaagccctgacacagatcta
cagtcggatgcagtcagaaatggaaaactagaaggttgtccaaagtcggagcagacacct
gagagaaaaaacacagaaattaaggataaacagggcgattttgacacaggtcgaagtctg
gaatcacagcccgatggtatagctggttttccaaatgcactgcttcaccgaaaagacccc
tcggctggtcagagagcactcaattatcatctggcaccacccaaccctgccttcccaaca
catcctgtcagtggaagatctctcccccagcagtgtccagtctcaaggctcccttatcgg
gtcaaccagccgcaacatccaccgatggtccagcagagtcagctcagccctgccttccct
ggtgggggtcacagcgcatccttctttagtggcaatattgccccacatagggcaatccag
tctcccactttagatgtgccagaatcaggaagcgttgaagagatgggaggctctattagg
acttctgtggcccacctggggggtcaccacccaaatctatcacaacaccacaacagagtc
agtagctttggggaggaaggacaagatgcaccgcattcagatggtcatgatctgcgacgg
cccttggctctggaggtcctgaaccaacagcagcaggctgccaggcttggccagtggaat
gaagcagcagggcctttcctcccagggggtgtcaccttccccttgccccaacaaaaccct
caccttgctcaaccacccatgactcgcttttctcatccgttacaccgtgcagcaagttgg
gcccttggtgccaacatagaggatgatgcaaattccactggtccacctttcaacaggtac
acaggcctcctgagagaaatcccccagcacgagtcacctgaaaccagggaagcaagtgaa
attcaaccccctcctcagtctcgccttctccagtatcgccagtcccgtgcctcagctgac
ccttcatcttctttagctgctacttcaaatcatgccggcccatttccgtctggaccatac
caccacgaaagcggacgcgatcaccttaacaacaacaacgttctcaacaactcagctctg
cagcagcataccgttggaaattctctttataatagcagttgctatcagacaccagcgcac
cctgccagtccccctgcatcacaggtcaaataccttttacaggagacccagtggtcccat
ggtggaggcacatccgtgagcccgccacaacagagccacctgttaggtaaccaggcccac
ggccttccatacggactgcccatcatggcaccacccagcaggcaggagcaagtccatttg
atgcagcttcaccatcaacagcagcaacatcagcagcagcagcagcagcagcaaagtcaa
gaccaggagtcctaccagtcattgtcacccagaacatctgcaaccactgccctgcacagt
gtagatgagtatgaacccagaggtcctggtcggcccctgtatcagcgccgcatttcctcc
agctatccagatcaaccctcacttgccaatagccacaatgccatgtcccagcagtcccag
tcctgtgcaggagacagaaatcaggaccaccttcatccgcacattcagcagcagcagcag
cagcacccacccccaccctacagttacccctcacatgagctctggcccagtaacggtggt
ggtcccggtccattccagaacattccatgtaatggaggtgggaccctcactcatcatcgg
gaacttctagcttccaaggccctccgtcagatggaggagcaggtaaaggcagagccaccg
gcagcacagcaaacacacccccacacgctaaactcccttcagcaccctggacagttccca
cccctcatgtccaacaagcagcagccacaacaggctcctgcagagcccgttcaggcagct
ccaaatctaaacaaaccacctactatgtcctatgccagtgctctccgcgctccgcccaaa
ccacgagcgattcgacctgagcaggccaaaaagaacagcgacccactctcactcctgcag
gagctcactatagggagttcagatggtagcaatggctactattcctacttcaaatga
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