KEGG   Syngnathus scovelli (Gulf pipefish): 125969579
Entry
125969579         CDS       T08785                                 
Symbol
lsm6
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm6
  KO
K12625  U6 snRNA-associated Sm-like protein LSm6
Organism
sscv  Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03018  RNA degradation
sscv03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sscv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    125969579 (lsm6)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    125969579 (lsm6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sscv03019]
    125969579 (lsm6)
   03041 Spliceosome [BR:sscv03041]
    125969579 (lsm6)
Messenger RNA biogenesis [BR:sscv03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     125969579 (lsm6)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     125969579 (lsm6)
Spliceosome [BR:sscv03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    125969579 (lsm6)
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 125969579
NCBI-ProteinID: XP_049577763
LinkDB
Position
5:complement(2152993..2154284)
AA seq 80 aa
MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAIEQTEEYVNGQLKNKY
GDAFLRGNNVLYISTQKRKV
NT seq 243 nt   +upstreamnt  +downstreamnt
atgagtctcagaaagcagacacccagtgacttcctgaagcagatcatcggcagaccggtg
gtggtcaagctgaactcaggcgtcgattaccgaggtgtcctcgcttgtctggatggttac
atgaacatcgccattgagcagactgaggagtatgtcaacgggcagctcaagaacaagtac
ggtgatgcctttctaagaggaaacaatgttctttatatcagcacacagaagaggaaagtc
tag

DBGET integrated database retrieval system