Syngnathus scovelli (Gulf pipefish): 125969594
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Entry
125969594 CDS
T08785
Symbol
htt
Name
(RefSeq) huntingtin isoform X1
KO
K04533
huntingtin
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125969594 (htt)
04131 Membrane trafficking [BR:
sscv04131
]
125969594 (htt)
03029 Mitochondrial biogenesis [BR:
sscv03029
]
125969594 (htt)
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
125969594 (htt)
Membrane trafficking [BR:
sscv04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
125969594 (htt)
Mitochondrial biogenesis [BR:
sscv03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
125969594 (htt)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_GCN1
Motif
Other DBs
NCBI-GeneID:
125969594
NCBI-ProteinID:
XP_049577788
LinkDB
All DBs
Position
5:9356952..9379785
Genome browser
AA seq
3193 aa
AA seq
DB search
MATMEKLMKAFESLKSFQQQQGPPTAEELVQRQKKEQATTKKDRVTHCLTICENIVAQSL
RTSPEFQKLLGIAMEMFLLCSDDSESDVRMVADECLNKIIKALMDSNLPRLQLELYKEIK
KNGASRSLRAALWRFAELAHLIRPQKCRPYLVNLLPCLTRITKRQEETVQETLASGIPKI
MAALGHFANDGEIKVLLKSFVANLKSSSPTIRRTAASSAVSVCQHSRRASYFYTWLLNVL
LGLVVPVDEEHLSHLILGVLLTLRYLMPLLQQQVNTTSLKGSFGVMKKEADVQPTAEQLL
QVYELTLYYTQHWDHNVVTASLELLQQMFRTPPPELLHLLINVGTIPHATVFRQDTENRS
RSGSILEFIAGGSSCSPLLPRKQRGKMLSGEEDGLEDDSEKTEVTTGSFTASVVGADISS
ATQVDIITEQPRSSQHTLQPGDSVDLSTSSEQGGGGGGTSASDTPESPNEIEEEMLSRSS
SGGANATPETADYTTPENATPDGGPLIEGGSLLSTNDSSLPPSDSSQTTTEGPDSAVTPS
DVAELVLDGSENQYSGMQIGTLQDEEDEGTAPSAQEEIAFLPSALALSKPHLFDIRGHNR
QGSDCSVDRFIPKDEPAEIEPDTKPSSINGPIGHYTDQSAEPLVHCVRLLAASFLLTGQK
NGVIPDKEVRVSVKALAVSCIGAAGALLPEAFFNSLYLEPLDGIPAKEQQYVSDVLDLIH
HGDPQIRGATAILCAAIIQAALTKTRYTIHTWLASVQSATGNPLSLVDLVPLLRKSLKDE
SSVTCKMACFAVRHCIMTICNSTLSDLGLQLMIDLLALTDSSYWLVRTELLDTLAEMDFR
LVNFLERKTETLHKGDHHYTGRLRLQDRVLKVVIRLLGDDDPRVRHVAASVVSRLVSRLF
YDCDQGQTDPVVAIARDQSSVYLQLLMHEAQPPSQFTVSTITRTYRGFNLSNTVSDITVE
NNLSRVVTAISHAFNSSTSRALTFGCCEALSLLASKFPVCTWSTGWHCGYVNTMGSVSSR
ASVTRSRGRASSLSQSSNTPNSNPNSSVPDVEQRTLTVGMANMVLSLLSSAWFPLDLSAH
QDALLLAGNLLAAVAPKCMRNPWAGEEEGGSGSSFPSGGPNKMEEPWAALSERSLVSMVD
QLFFHLLKVLNICAHVLDDTPPGPAVKATLPSLTNTPSLSPIRRKGKEKEIADPNAVPLS
PKKSNEINAGRVADSTSGTAVNKSNTLGNFYHLPPYLKLYDVLKATHANYKVTLDLHSSH
EKFGGFLRAALDVLSQLLELATLHDISKCVEEILGYLKSCFTREPTMATVCVQQLLKTLF
GTNLASQYEGVLSGPSRAQGKVLRLGSSSLRPGLYHYCFMAPYTHFTQALADASLRNMVQ
AEQEQDTSGWFDVMQKASNQLRSNIANATRHRSDKNTIHNHIRLFEPLVIKALKQYTTST
SVALQRQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRDSEAVIPNIFFF
LVLLSYERYHSKQIISIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGSNKADA
GKELDTQKEVVVSMLLRLVQYHQVLEMFILVLQQCHKENEDKWKRLSRQIADVILPMIAK
QQMHLDSPEALGVLNTLFESVAPSSLRPVDMLLKSMFVVPATMASVTTVQLWVSGILAVL
RVLVSQSTEDIVLSRVHELSLSPHLLSCDTIRRLCQQSTSPSGPPTLDSLASQELSGDSP
KALPEETFARFLLQMVGVLLDEISCKQIKVDITEQQHTFYCQQLGTLLMCLIHIFKSGMF
RRITAAASLLLKDEGASSQNDLEASLYYHLENLNAMVQGLITTHPSLVLLWCQVLLLVNY
TNYSWWAAVHQTPRRHSRSCTKLLSPHSSGEGDEENPVSMFAMINREIVRRGALILFCDY
VCQNLHDSEHLTWLIVNHVSDLISLSHEPPVQDFISAVHRNSAASGLFIQAIQSRCDNLT
NPTMLKKTLQCLEGIHLSQSGSLLMLYVDKLLSTPFRVLARMVDTLACRRVEMLLAETLQ
NSIAQLPVEELDRIQEYLQISSLAQRHQRFYSLLDRFRATVAKTSSPAPPVTSHPLDGRP
PPAPELVTADKEWYVTLVKSQCFLRGDVSLLETTELLTKLPAPELLSIMRSDTFNLSLLC
PCLSMGVQRLTRGQGPLLLETALQVTLEQVAGITQSLPTPHRSFLPTSEPQSYWTQLADV
YDEPGFYRKVLALCRALSQYLLCVNQLPSSLRILPDKEDLITTFTCTATEVIVWRLLQDQ
LPLSVDLQWSLACLCLALQQTCIWNKLSTAEYTTHTCSLIYCLRLIMVAVAVSPGDQLLL
PEKKKKLARDAEGDEVDAIHTKYKCEWQACEIMAELVEGLQSILSLGHHKNSAIPAFLTP
TLRNIVISIARLPLVNSFTRVPPLVWKLGWSPQPGGEFGTALPEIPVDFLQEKDVFREFL
YRINILGWSSRTQFEETWATLLGVLVTQPITMDQEEDTQQEEDLERTQLNVLAVQAITSL
VLGAMMLPTAGNPAVSCLEQQPRNKSLKALETRFGRKLAVIRGEVEREIQALVSKRDNVH
THHSYHAWDPVPSLSAASAAGMLISHEKLLLQINTEREIGNMDYKLGQVSIHSVWLGNNI
TPLREEEWGEDEEDEADTPAPTSPPVSPINSRKHRAGVDIHSCSQFLLELYSQWLIPSSP
SNRKTPTILVSEVVRSLLAVSDLFTERNQFEMMFSTLMELQKLHPPEDEILNQYLVPAIC
KAAAVLGMDKAIAEPVCRLLETTLRSTHLPSRMGALHGVLYVLECDLLDDTAKQLIPTIS
EYLLSNLRAIAHCVNLHNQQHVLVICAVAFYMMENYPLDVGSEFMAAVIQVCGVMVSVSE
DSTPSVIYHCVLRGLERLLLSEQLSRVDGEALVKLSVDRVNMPSPHRAMAALGLMLTCMY
TAVLASRSEVSGVRGQVDSGSAVADVVGVTAGHVGFSSGKEKASPASRPAHSDPQAPDSE
SIIVAMERVSVLFDRIRKGLPSEARVVSRILPQFLDDFFPPQDVMNKVIGEFLSNQQPYP
QFMATVVYKVFQTLHATGQSSMVRDWVLLSLSNFTQRTPVAMAMWSLSCFFVSASTSQWI
SALLPHVISRMGSCEVVDVNLFCLVAIDFYRHQIDEELDRRAFQSVFETVASPGSPYYQL
LGSLQSIHQDTTL
NT seq
9582 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccatggagaaactaatgaaggccttcgagtcacttaagtcattccagcagcag
cagggaccaccgaccgccgaggagcttgttcagagacagaaaaaggagcaggccacaaca
aaaaaagacagagttacacactgcttgacaatatgtgaaaacattgtggcacagtcgctc
agaacatctcctgaattccagaaattgctgggcatcgccatggaaatgttccttctctgc
agtgacgatagcgaatctgatgtccgaatggtagccgatgagtgcctgaacaaaataatc
aaagcactgatggactctaatctgccccgactgcagctagagctgtacaaagaaattaaa
aagaatggtgcctctcgaagtttgagagcagcattgtggaggtttgctgagctcgctcac
ctcattagacctcagaaatgcagaccctatttggtcaaccttttgccgtgcctcacgaga
atcaccaagcggcaggaagagactgtgcaggagacattggcttcaggcatacctaagatc
atggccgccttgggacattttgctaatgatggcgagatcaaggtcctgttgaaatcattt
gttgccaacctgaagtccagctcccccaccatcagaaggacagccgccagctcggccgtg
agcgtgtgccaacactcgaggcgcgccagttacttttacacatggctccttaatgtgctg
ctgggtctggtggttccagttgatgaggaacatctcagccatctcatcctcggggtgctt
ttaaccctgcgctacctgatgcctctgctgcagcaacaggtcaacaccacaagcctcaaa
ggaagctttggagtcatgaagaaggaggcggatgtgcagcctacagcagagcagctgctg
caggtgtacgagctgactttatactacacccagcactgggaccacaatgtggtgactgcg
tctctggagcttctgcagcaaatgttcaggactccaccaccagagcttttgcatctgctc
attaacgtaggcaccattccacatgccaccgtgtttcgtcaggatactgaaaatcgctcg
cggtctggcagcatcctggagttcatagcaggagggtcttcctgcagtccactcctccct
aggaagcagagaggtaaaatgctttcaggggaagaggacggactggaagatgattctgaa
aagactgaggtcaccactggctcttttacagcatctgttgtcggcgccgatatctcctcg
gcaacccaggtggacatcatcactgaacagccgcgctcctcccagcataccttgcagcct
ggggactctgtggacttgagcacctcctctgaacaaggtggaggtggaggcgggacatct
gcctcagatactccagagtcacccaatgaaattgaggaggaaatgctgagtcggagctca
agcggtggtgctaatgctacgccggagacggctgactatacaacaccagagaatgccaca
ccggatggtgggcccttaattgaaggcgggtcacttctaagcaccaatgacagctcactc
ccgcccagtgactcctctcagacgaccaccgaaggaccggactccgctgtgaccccttca
gatgttgcagaactggtgctggatggcagtgagaaccagtactcggggatgcagatcgga
actctgcaggatgaggaagatgaagggacagcaccttcagcccaagaggaaatcgctttt
ctcccttcggcactggctctgagcaaaccacatctctttgacataagaggtcacaatcgg
cagggctctgactgcagcgtggaccgctttataccaaaggatgaacccgctgaaatcgaa
cctgacaccaagccatcaagtataaatggtccaatcggacattatacagaccagagtgcg
gagccacttgtgcattgtgtcagacttcttgctgcttccttcctattgacgggacaaaag
aatggtgtgatccctgacaaggaggtacgagtgagtgtgaaggccctggcggtcagttgt
ataggagcagctggggcactgcttcctgaagcattctttaattccctctatctggagccg
ctggacggcatcccagcaaaagagcagcagtatgtcagtgacgtgctggacctaattcac
catggagacccacagattcggggtgccacagccatcctctgtgcagcaattattcaggct
gcactcactaaaacccgttacaccatacacacctggctggccagtgtacagagtgcgaca
ggtaaccctttgtccctggtggacttggtgcctttgctaagaaaatctctgaaagatgaa
tcttccgtaacctgcaaaatggcttgctttgcagtcaggcactgcatcatgaccatatgc
aacagtacactaagcgatctgggcctgcagttgatgatcgacttactggccctgacagac
tcctcttactggcttgtccgcactgaactgctggacaccctggctgagatggattttcgg
ttagtcaacttcctagaaaggaaaactgaaacattgcataaaggcgatcatcactacact
gggcgtcttcgactgcaggaccgggttctaaaagtagtcattcgtctcttgggtgatgat
gacccgagagtccgccatgtagcggcttctgttgtcagcaggctcgtatcaagattgttt
tatgactgtgaccaaggccaaacagaccccgttgtcgctattgcccgagaccagagttca
gtttacctgcagctgctgatgcacgaggcacaacctccctctcaatttacagtgagcacc
atcacaagaacttatcggggtttcaacttatcaaacacggtgtctgacatcacagtggaa
aacaacttgtctcgagtcgtcaccgctatctcccatgctttcaattcctctacctcaagg
gctctgacttttggctgctgtgaggcactgtctctcttggcttcaaaatttccggtgtgc
acatggagcacaggctggcactgtggctacgtcaacaccatgggttcagtttcatctcga
gccagtgtcacccgcagcagaggcagggcttcaagcctgtcccagtcgagcaatactcca
aactccaacccaaactcctctgtacctgatgtggagcaaaggactcttacagtgggaatg
gccaacatggtgctttccttgctgtcatctgcctggttcccacttgacctttctgcacac
caggatgccttgttgctcgctggcaacctgcttgctgcggtggctcctaaatgcatgcgc
aacccgtgggccggagaggaagaaggtggcagcggcagctcttttcctagtggaggccca
aataagatggaagaaccctgggccgcattgtcagagcgctccctggtgtcaatggtggac
cagctttttttccacctcctgaaagttctcaacatctgtgcccatgtgctggatgacact
cctccgggaccagccgttaaggccacactgccttccctaaccaacacaccctcactcagt
cccattcgcagaaagggcaaagagaaggagattgctgatcccaatgctgtccctttgagc
ccaaagaaaagcaatgaaatcaatgcaggcagagttgctgacagcacaagtggaacagca
gtaaacaagtctaacactcttggcaacttctaccacctgccaccctacctcaagctctat
gatgtcctcaaagcaactcatgccaactataaggtgacgttggaccttcacagtagccac
gagaagtttggtggtttccttcgtgctgccttagatgttctctctcagctgcttgagctt
gccacactccatgacatcagcaaatgtgtggaagaaattttgggctatctcaaatcctgc
ttcacacgagaacctaccatggctacagtttgtgttcagcagttgttaaagacactgttt
ggaaccaacttggcctcccagtatgagggtgtcctgagcggacccagccgtgcccagggc
aaggtgctccgccttggctcatcgagcctgaggccgggcttgtaccattactgcttcatg
gcaccttatacacacttcacacaggctctggctgatgccagtctccgtaacatggtgcag
gctgagcaagagcaggatacctctggatggtttgatgtgatgcagaaagcgtcaaaccag
ctgaggtccaacattgcaaatgcaacacgccacagaagtgacaagaataccatccacaac
cacatccgtctctttgaaccacttgtgataaaagctttgaagcagtacacaaccagcacc
tccgtggcactgcagagacaagttttggaccttctggcccaacttgtgcagctcagagtg
aactactgccttcttgattctgatcaggtgttcatagggtttgtcctgaaacagtttgaa
tatattgaagtgggacagtttagagattcagaagcagtcatacccaacatctttttcttc
ctggtgctgctgtcttatgaacgctaccattccaagcagatcatcagtatccccaaaatc
atacaactgtgtgacggcatcatggccagcgggaggaaagctgtcacgcatgctatccct
gccttgcagccaatagttcatgacctctttgtcttgagaggctccaacaaggcagatgca
ggcaaagagttggatacgcagaaagaagtggtggtttctatgctcctcagacttgttcag
taccaccaggttttggagatgtttatcctggttctgcagcagtgtcacaaagaaaatgag
gacaaatggaagaggttgtccagacagattgcagatgtcatccttcctatgattgcaaag
cagcagatgcatttggattctcctgaggctttgggcgttttgaacaccctttttgagagc
gtcgcaccttcctctcttaggcctgtggatatgctgctcaagagcatgtttgtcgtcccg
gctaccatggcatcagtgactacagtccaactttgggtctctggtatcttggcagtgctc
agggtacttgtgtctcagtcaactgaggacattgtgttatcgcgagtgcacgagctctcc
ctttccccgcatcttctttcctgcgacacgatccgccgcctctgtcaacaaagcacctct
ccaagtggccctcccactttggattcattagcgagtcaagaacttagcggtgattcacct
aaagccctacctgaggaaacgtttgccagattcttgctccaaatggttggagtgctgctg
gatgaaatttcctgcaaacaaattaaagtggacatcacagagcagcaacacactttctat
tgccagcagctgggtacactgctcatgtgtttaatacacattttcaaaagtggtatgttt
cgtaggatcacagctgcagccagccttctcctcaaagatgagggtgcaagtagccagaat
gatttggaagctagcctttactaccatttagagaacctgaacgccatggtgcagggcttg
atcaccacccacccatccctggtgctgctctggtgccaagtcctcctcctcgtcaactac
acaaactactcctggtgggctgcagttcaccaaacaccaaggagacacagcagatcatgt
acgaaactgctcagccctcactcctcaggcgaaggtgatgaggagaatcctgtgtccatg
tttgccatgatcaacagagagattgttcgcaggggagccctcatccttttctgtgattat
gtgtgtcaaaacctccatgactcagagcaccttacttggctaatagttaaccatgtgagt
gacctcatcagcctttcccatgagccacccgttcaggatttcatcagtgctgtgcaccga
aattcagctgccagcggtctcttcatccaagctattcagtcacgctgtgacaacctgacc
aatcctaccatgctaaagaagactttgcagtgtttagaaggcatccacctgagccaatct
ggctccctgctaatgctgtatgtggacaagctactgagcacaccttttagggttttggct
cgtatggtggacacgttggcatgtcgcagggtggagatgctgttggcagaaacgttacag
aacagtatagcccagctgcctgtggaggaactggacagaatccaggaatacctccagatc
agtagcctggctcagaggcatcagaggttttactccctgctggacaggtttcgagccact
gttgctaaaactagtagcccggcacctccagtgacatctcaccccttagatggccgtcca
ccccctgcccctgaactggtcactgcagataaggagtggtatgtgaccctggtgaagtct
cagtgttttctccgtggagatgtgtctctgttggagacaactgaactccttaccaagcta
cctgcccctgagcttctcagcattatgagaagtgacacgttcaacctgagtctgctgtgt
ccttgcctgagcatgggtgttcagcggctaacacgagggcagggcccactcttgctggag
acggcgttgcaggtgaccttggagcaagttgctgggattacacagtctcttcctacccca
caccggtcctttttaccaacttctgagccacagtcttactggacccaactagctgatgtg
tatgatgagccaggtttttaccgcaaggttttagccctctgcagagctctctcccagtac
ctcctctgtgtaaaccagctaccatcctcattacgcattctccctgacaaagaagacctc
ataactactttcacctgcaccgccactgaggttatagtctggcgactgctccaggatcag
ctccctctgagtgtggacttgcagtggtctttggcttgtctgtgcctggccctgcagcag
acttgcatctggaacaaactgtccaccgcagagtacacgacacacacgtgttccctcatc
tactgcttacgtctcattatggtcgccgttgccgtgagccctggagaccagcttctgctc
ccagagaagaagaaaaagttagccagagatgctgaaggagatgaagtggatgccatacac
acaaaatataagtgtgagtggcaagcttgtgagatcatggcagaactggtggaaggcctg
cagagcattctgtcattagggcatcacaaaaacagtgcaatccctgctttcctgactcca
accttgcgcaacattgtgatcagtattgcccgactgccactggtgaacagtttcactcgg
gttcctccactggtttggaaactaggctggtccccacagcctgggggggagtttggtaca
gcattgcctgagattcctgtagactttctgcaggagaaggatgtcttcagagagttcctg
taccgcataaacattcttggctggagtagcaggactcagtttgaggagacttgggctact
ttgctgggcgtgctggtcacccagccaatcacaatggaccaggaggaggacacacagcaa
gaggaagatttagagcgtacgcagttgaatgtattggcagtgcaagccatcaccagcctg
gtgttgggtgccatgatgctgcccactgctggcaaccctgccgtcagctgtctcgaacag
cagcctcgcaataagagcctcaaggccctggagacgcggtttggaaggaaactggcagtg
atccggggtgaggttgagagagaaatacaagcacttgtgtccaagagagataacgttcac
acacaccattcctaccatgcctgggaccctgtgccctctttgtctgcagcctcagcagca
gggatgctaatcagtcatgaaaagttgctactgcagatcaacacagagcgtgagattgga
aacatggactataaattgggacaggtgtccattcattcggtgtggttaggaaataatatc
accccattgcgggaggaagaatggggtgaagatgaggaggatgaagcagatacaccagcg
cccacctccccacccgtctcgccaattaactctcgaaaacatcgtgcaggggtggacatt
cactcatgttcccagtttctcctggagctctacagccagtggcttatcccaagctctcca
agtaaccggaaaacaccaaccatcctcgtcagtgaagtggtccgatcgctgctggcagtg
tcagacctgtttactgagaggaaccagtttgagatgatgttctccacccttatggagctg
cagaagcttcacccaccagaggatgagatccttaatcaatacttggtgcctgctatctgc
aaggcagctgcagtgttgggcatggacaaagcgattgccgaaccagtgtgtcgcttgtta
gagacgaccctccgcagcacacaccttcccagccgcatgggtgctcttcacggggtgctt
tatgtcctggagtgtgaccttctagacgatacggcaaagcagctgattccaaccatctca
gagtacctgctgtccaacctaagggctattgctcactgtgtgaacctgcacaaccaacag
catgtcctggtgatatgtgctgtggccttctacatgatggagaactaccccctggatgta
ggatccgagtttatggctgcagttatccaggtgtgcggtgtgatggtgtcagtcagcgag
gactccactccctcagtaatctatcactgtgtgctccggggtctggagcgcctcttgctg
tctgagcagctgtctcgtgtggatggtgaggcactggtcaagctgagcgtcgacagagtg
aacatgccgtcacctcaccgagccatggctgccctgggcctcatgctcacctgcatgtac
actgcggtgcttgcgtcccgttcagaagtctcaggggttagaggtcaggttgactctggc
tctgctgtagcggatgtggtgggggtcacggcgggtcatgttggtttctcctcaggcaag
gagaaagccagccccgccagtcgccccgcacactcggaccctcaggccccagacagcgag
tcgatcattgttgccatggagagggtctctgtgctctttgacaggatccgtaaaggtttg
cccagtgaggctcgggtagtgtcaaggattcttccacagttcctggatgatttttttcca
cctcaagatgtcatgaacaaggtcattggagagttcctgtccaaccagcaaccctatccg
caattcatggccacagttgtttacaaggtttttcagacactccatgctacaggccagtcc
tcaatggtaagagactgggtgctgctctccttgtcaaacttcacgcagaggacaccagtg
gccatggctatgtggagcctctcctgcttctttgtctccgcttccacctcgcagtggatc
tcagccttacttcctcacgtcattagcagaatgggttcatgtgaagtggtcgatgtcaac
ctgttctgcttggtggccatagacttctatcggcaccaaattgacgaggagctggaccgc
agggccttccagtcagtctttgagacagtcgcatcgcctggaagtccttactatcagctg
ctggggtcactgcaatcgatacatcaggatacgactctttga
DBGET
integrated database retrieval system
