Syngnathus scovelli (Gulf pipefish): 125969607
Help
Entry
125969607 CDS
T08785
Name
(RefSeq) multiple PDZ domain protein isoform X1
KO
K06095
multiple PDZ domain protein
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
125969607
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
L27_2
L27_1
Motif
Other DBs
NCBI-GeneID:
125969607
NCBI-ProteinID:
XP_049577812
LinkDB
All DBs
Position
5:complement(5515671..5546521)
Genome browser
AA seq
1847 aa
AA seq
DB search
MPERKWHLTETQSHQESAQPSKSMMEIMDTQRALEAVERLQAKLKERGEVPAQEKLSLLK
TVLRSPLFLHILTLQKAQRKPPAKGKGLSKSVSMNCGKWQGVAMDAKTLSHSDSYTWAIE
NQRSNRSLHRDGSVSSLDSQDLSFSDNCIHTESQYCTPPRISRTMSMGRNLAAIAHERRH
LEIIELTNDGKGLGFGIIGGRSTGVMVKTILPGGAAGQDKRLRSGDQILRIGDTDLAGMN
SEQVAQVLRNAGTKVKLLIARDISKDNISSPVLSQESLDGELFDLNDDYEFSVQFTKNSR
GLGFTISSYIGDLNSIYSAGVTVKSILKGSSVDQDGHIHIGDIILSVDGVSLQGCSEQRA
MEVLRRTGPVVRLRLLRKAVRLSHILPPVPPLQPLRHSHSFHEGNPYKVGLNKIHETGIC
SLREISRRAAYADRRRRHDSRNGVKLTPAEEEDLRMRWQRAVGPRYEVVVCQLQRFSETS
GLGISLEARAGHHYLCSVVPEGPIGQSGKIFLGDQILEVNGIPLIGETHKEVVNILKELP
MCVYLVCSRIGAPAIPDSDEEEEDDSQLTLKELLAEFNDKLDQGCVIPCPTAEDITKRGV
PPMSPPLAMWEREAQVVELEKGESGLGFSILDYQDPEDATKTVLVIRSLVPGGVADRDGR
LLPGDRLMFVNETDLEGSSLDYAVHVLKSTGYGPVHIGVAKPLPLELCGGLTPILERSTR
SFCDDSESHSQVTLLAEAAEADTCNLADNNVQTYYNNSGIQPHLHFGMKEDNDMQPAPPL
PPRTSFEKTITVVRGNRSLGMSVSAIKDGSGMLVRSVAPGGSVSQDGRLGVGDAILAING
ESTSNLTNAMARSMLRRHSVIGPELSINYVPAHQVDEHRTRLCLPPLASILEEPTSSPTP
PEQWLARSPLQCKTPGPDVTTSKTRFLLEDTNVVPRVIPDPDWSHQRLPHKEGEEEAEGK
GKNENGVDDEVRKVAADEEAEEFRSRTPVFWDQPRRVRLTRAPGQSLGISIMGGKGMGQR
LSGGEMMRGVFIKHISAESPAAHNSAIQVGDRILEVSGVDLSDASHEQAVEAIRRAGDCV
DLLIQSREQVAQSLLIPNHEKPTPILPSNSHSSQEVQNLAGLFLSLPPRNPFTPTPFKVP
QQTSNRAGRPSPVTVNTPNIAASDDHENTGRKKMLQRYGSLSGKLHMIELEKHTAEHGLG
IRLAGNKDGSRARMSVYVADVDPRGPAGLDGRIRVGDELLEINGQILYGRSHQNASTIID
NAPSKVKIILIRNKSENSCSTMESDDTLSSQADSEIHKGIFTDIHNVIPPQLCLRDSMGK
VGGSVKAVNDEPGTKLNVEKASVKVSVGCPEATSSTSSALSKPHQVASPLPDRTTALGAK
RTIPTEPSDWCAATSASDPLNCPIVAGKETTIEIFKGNLGLGLSIVGGCDTLLGSVIIHE
VNDGGAAQRDGRLQAGDQIFEVNGIDLRQATHDEAISVLRLTTQRVELRVFRHQLAYREE
DLWDVFSLVLRPHPVKGLGFTTVAKSNDTGIFVSDIIKGGVTDLDGRLLLGDQILSINGE
DVRAESQELAERLLQNCCGVFHLEVARFKAGLQYPERNQEYFKLCFIQSEEDSDSSTLTP
SSSSVCQQRETEHRTSFEDYLAPKKVVIKKGPRDSLGITLAGGVGSPHGNVPLFIATMDT
SGSAAKTQQLKLGDRILSINDVSMEGMTHIQAGALLKNAIGAVTLQVEAGRSPHDPRGGH
ERPSGQTGSLPCFHTNLCTRMYKTVSLDRGSSGLGFSIVGGFGSPHGDLPIYIKTIFNKG
AAIENGRLKRGDQIIAVNGHCLEGVTHSEAVDLLKRTKGTVVLTVLS
NT seq
5544 nt
NT seq
+upstream
nt +downstream
nt
atgccagaaagaaaatggcatttaactgagacgcaaagtcaccaagaaagtgctcaacca
agcaaatctatgatggagatcatggatactcagcgtgccttggaagctgtggagcgactt
caagccaaactgaaagagcgaggggaggtccctgctcaggagaaactcagcctgctgaag
acggttctacggagccccctctttcttcatattctcaccttacagaaggctcagcggaag
cccccagccaaggggaagggtctctccaagtcagtgtccatgaactgtggcaagtggcag
ggtgtggcgatggacgctaagacgctcagccacagcgactcctacacttgggccatcgag
aaccaaagatccaacaggtcactccacagggacggaagtgtttcctccctggactcgcag
gatttgtccttctcagataactgcattcacaccgaatcgcagtactgcacaccacctcga
atatctagaaccatgtctatggggaggaatctggcagcaattgcacatgagaggcgtcac
ctggagatcatcgaactgaccaatgatgggaagggtcttggctttggcatcatcggagga
cggagcacaggagtgatggtcaagaccatacttcctggaggagcagctggacaggataaa
cgtctgcgcagcggggatcagattttgcgcatcggtgacaccgatctggctggcatgaac
agcgagcaggtggcgcaggtgctacgaaatgctggtaccaaggtcaagctactcatcgcc
agggatatcagcaaggacaacatttcctctcctgtcctcagtcaggagtccttggacggc
gagctctttgacttgaacgatgactacgagttcagtgtgcagttcactaaaaacagccgg
gggctgggattcaccatctccagctatataggcgacctcaactcaatatacagtgctggt
gttacagtaaagagcattttgaagggcagcagtgtcgaccaagatgggcacattcatatt
ggagatatcatcctgtctgtggatggggtgagcctccagggctgcagtgagcaacgtgcg
atggaggtgctgagacggacgggtcccgtcgtcagactgagactcctgagaaaggccgtc
cgcttgagtcacattttgcccccggtccctccgctccagcctctccgacactcccacagc
ttccacgagggcaatccctacaaagtgggactaaacaagattcatgagacaggaatatgc
tcactgcgtgaaatctcccggcgtgcagcatacgccgacagacgacgccgacatgattca
agaaacggtgtgaaactgacaccggcagaggaagaagacctaaggatgaggtggcaacga
gcagttggaccaagatatgaagtcgtagtttgtcagctgcagcgcttcagtgagacaagc
ggccttggcatcagtctggaggctcgggctggacatcattacctgtgctccgtggtaccc
gagggcccgattgggcaaagtggcaagatcttccttggcgaccagatactagaggtgaac
ggcattccgctcattggagaaacacacaaagaggtggtcaacatcctcaaggagctgccc
atgtgtgtttacctggtgtgttctcgcatcggcgcccctgccatccctgacagcgatgag
gaagaagaggacgatagccaactcaccctgaaagagctgctggctgagttcaatgacaag
ttggaccagggctgcgttattccttgtccgacggccgaggacatcacaaagcgcggggtg
cccccgatgtcaccccctctggccatgtgggaaagagaggcgcaggtggtagagctggag
aaaggggagtcgggattgggcttcagcatcctggactaccaggatccggaggatgctact
aaaacagtgctggtaatccgctccttggtgccgggcggtgtcgctgaccgagatggccgc
ctgctccccggagatcgcctcatgtttgttaatgagaccgacttggaaggttccagtctg
gattatgccgtgcatgtactgaagtccaccggttatggccccgtgcatattggtgttgcc
aaaccgctgccgttggaactttgcggcggcttgacgcccatcttggaaaggagcacacgg
tcattctgcgatgacagcgagagccacagtcaggtcaccctgctagctgaggcggctgag
gccgacacttgcaacctggcggataacaacgtccaaacatattacaacaactcgggaatc
cagccgcatctgcattttggcatgaaggaagacaacgacatgcagcccgcccctcctcta
cctccgcgcaccagctttgaaaagacaatcacagttgtccggggcaaccgtagccttggg
atgtcggtgagtgctatcaaggacggctcaggcatgctggttcgcagcgtggcccctggg
ggctctgtcagtcaagatggcagactcggagtgggtgacgcaatcttggcgatcaacggg
gaatctacgtccaacctgactaacgccatggcccggtcgatgctgcgtagacactccgtc
attgggccagagctcagtataaattacgtgccggctcatcaggtggacgagcaccgtacc
cgactgtgtttgccgccgctggcctccattctagaggagccaacttcctcccccacacca
ccagaacaatggttggcccgatcccctctccaatgtaaaaccccaggtccagatgtgacc
acaagcaaaacaaggttcctattagaagacaccaacgtagtccctagagtgattccagat
ccagactggagtcatcagcgcctacctcacaaagagggggaagaagaagcagaaggcaaa
ggaaaaaatgagaatggcgtcgatgacgaagtcagaaaggtggctgcggatgaagaggca
gaagagtttcgttctcgcactcctgtgttttgggatcaaccgagacgagtgcggcttacc
cgagcaccaggccagtcccttggtattagcattatgggagggaagggcatgggtcagagg
ctgagtggtggcgagatgatgaggggcgtcttcatcaagcacatcagcgctgagagccca
gcagcacataatagcgccatccaggttggagacaggatactagaggtgagcggtgtggac
ctaagtgatgccagtcatgagcaggcggtggaggctatccgtagggcaggagactgtgtg
gacctcctgatccagtccagagagcaggtagcacagtcccttttgattcccaatcatgaa
aaaccgactccaatcttgccatccaactcacacagcagtcaggaagttcagaatcttgct
ggtttgttccttagtctcccccctagaaacccattcaccccaactccatttaaggtgcct
cagcagacttccaatagagcgggtcggccaagccccgtaactgtcaacacaccaaacatt
gcagcctctgatgatcatgagaacactggcagaaaaaagatgctccagcgttatggcagc
ctgtcagggaagctccatatgattgagttggaaaagcacacagcagaacatggtttggga
atccgactcgcaggcaataaggatggctccagggcccgcatgagcgtctatgtggctgat
gtagatcctcgaggacctgccggcttggatgggcgaatacgggtgggggatgagttattg
gagatcaacggtcagatcttgtatggacgtagtcatcagaatgcctccaccattattgat
aatgctccttctaaagtcaagatcattctcatcagaaataaaagtgaaaatagctgctcc
acaatggagagtgatgacacactaagcagccaggctgactcggaaattcataaaggaatc
tttacagatatccacaatgttatcccaccacagctctgtttgcgggacagcatgggaaag
gttgggggcagtgtcaaagcagtgaatgacgagcctgggaccaaactgaatgtggagaag
gccagtgtcaaagtgtctgtcggctgccctgaggctacttcatctacttcctccgccttg
tcaaagcctcatcaagtagcatcgccccttccggatcgcaccacagccctcggtgcgaag
cggacaattcctacggagccttctgactggtgtgcggccacttcagcgtctgaccctctt
aactgtcccattgtggctggcaaagaaaccaccatagagatttttaaaggaaacttgggc
ctgggtctcagcattgttggaggatgtgacactctgttggggtcagtaataatccacgag
gtgaatgatgggggagcagcgcaaagagatggaaggttgcaagccggagaccagatattc
gaggtcaacggtatcgacttgaggcaggccactcacgatgaggccataagtgtgctgaga
ctcaccacccaacgtgttgagctacgtgttttcagacaccagcttgcctacagggaggag
gacctatgggatgtcttcagtcttgtcctgaggcctcatcctgttaaaggactgggcttc
accactgtggccaaaagtaatgacaccggcatctttgtgtcagatatcatcaaaggaggc
gtaacggatttggatggcaggttgttgctaggtgaccagattctgtcaatcaacggggag
gacgtccgtgcagaatcacaagaactcgccgagaggcttttgcagaattgctgtggcgtg
tttcaccttgaggtggctcgttttaaagctggactgcaatacccagaacggaaccaggag
tactttaagttgtgttttatccagagtgaagaagactctgactcttccaccctgacaccc
tccagttcttctgtctgccaacagagggagacagaacacagaacatcatttgaagactac
cttgcccccaaaaaagttgttatcaaaaagggtccacgtgactccctaggcatcacttta
gcaggaggtgtgggcagtccccatggcaacgtacctctttttattgcaaccatggatacc
agtggatcagctgccaaaacacagcaattaaagctaggagacaggatcctcagtataaat
gatgtatccatggagggaatgactcacatccaggctggggccttgcttaagaatgccatt
ggcgctgtcaccctgcaggtggaagctggacgcagccctcatgatcccaggggtggacat
gagcgaccatcaggccagactggtagcttgccgtgctttcacaccaacctctgtactcgg
atgtacaaaaccgtcagtctggatcgagggtcttcaggcctgggcttcagcatcgtggga
ggctttggaagcccacatggagacctgcccatttatatcaaaactatctttaacaaggga
gcagccattgagaatggaagactgaaacgaggtgatcagatcatcgcggtgaatggacac
tgtctggagggggtgacacactctgaagctgtggacctcctcaagaggaccaaaggaact
gtggttctcactgttctctcgtga
DBGET
integrated database retrieval system
