Syngnathus scovelli (Gulf pipefish): 125970063
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Entry
125970063 CDS
T08785
Symbol
acanb
Name
(RefSeq) aggrecan core protein isoform X1
KO
K06792
aggrecan 1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
sscv00535
]
125970063 (acanb)
00536 Glycosaminoglycan binding proteins [BR:
sscv00536
]
125970063 (acanb)
04091 Lectins [BR:
sscv04091
]
125970063 (acanb)
Proteoglycans [BR:
sscv00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
125970063 (acanb)
Glycosaminoglycan binding proteins [BR:
sscv00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
125970063 (acanb)
Lectins [BR:
sscv04091
]
C-Type lectins
Lecticans
125970063 (acanb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Xlink
Lectin_C
Sushi
V-set
Ig_3
UL45
I-set
ig
PGDH_inter
Izumo-Ig
Motif
Other DBs
NCBI-GeneID:
125970063
NCBI-ProteinID:
XP_049577944
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All DBs
Position
6:15309549..15320981
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AA seq
1381 aa
AA seq
DB search
MTSLLLLCVSLPFISATTSFGHHDDLDGTLRVSIPSAAPLRPLLGGKVVVPCYFLDNTVS
DPGAPTIAPLSHRIKWTFITKENITTVLVATEGKVHVERDYLDRVTMVNYPIVSTDASLE
ITELRSKDSGTYRCEVTHGIEDNYDSVDIQVQGIVFHYRAITTRYTLTFEKAKAACIQNS
ATIATPAQLQAAYDDGYHQCDAGWLSDQTVRYPIHEPRKECYGDKENFPGVRTYGVRDVN
ETYDVYCFAEKMAGRVFYSMSVEKFTFQEADDQCTKLGARLANTGELYLAWKGGMDVCNA
GWLGDRSVRYPINIRRPQCGGGLLGVRTVYLFPNQTGYPLPSSRYDAICFQGHDDEGAVP
GRITPFPDIMSITPAPGVYPGLTTPAGGQEIKQGGVDILTKPISPPFTDATMAPTGVVFH
YRPITGRYTLSFLEAQQACKSIGAVIASPLQLQAAFEKGLHQCDAGWLADQSVRYPIVSP
RDNCAGNLLHLPGVRSYGLRPDSERYDVFCYVESLQGEVFFTSDYDSFSFEEAVQHCEEL
NTTLATTGQMYAAWNQGLDKCRPGWLMDRSVRYPIKSSRSNCGGGQVGVHIIYAFPNQTG
FPDEHSRYDAYCFKAETLTIGTDSKSTIDTISETIFDKLLTVDVIRKTTVAVDHVIPTLE
PSVGYNDTQTILNATEIEDVIQRTNITTQLIAPTVPLDGSASGSGDASASGDLQISGDHS
ASGDLQISGDHSASGDLQISGDHSASGDLQISGESSTTSGSGVSGSGLDITFSGHTDILS
GDHSASGDPQGAEGGSAIFTSGDSYSASGSGSGFVVSGSGSARGSGDISGSSGDILINIL
DGKEKELVIPTLTEQELGSGVLWASGMSGSGSMSGSGGMSGSGSGISGITFTVNSAIDMT
VQQSGEQELYGSAEMSGSGSISGSGSLSGSGISGFSGITFTDSSGVDLTVLQSGEQELYG
SSEMSGSGSLSGSGSGSLSGSGISGFSSISFTDNSAIDLTIQPSGDQELSGSHPYASGYP
SGFPSGFASGLSGSGSASGQPTQTDDDVIFLTTDGLKEVTVSPQVHHSEEGRGVVEISGQ
ESGSGTPLQISSSGEPSTAGVSIAFPPGSTMTYPDNNGSSGYEEEEATVVVLTPDPAYVS
PTTAPSISLATPPVVEQPQVEEAVHGCPEGWLEFRGSCYLHFADRHTWSDAEQRCQELNA
HLVSVTSEEEQQFLNSKGQDYEWIGLNDKEVQNEFRWTDGSALTYENWRPNQPDNYFNSG
EDCVVMIGHEGGQWNDVPCNYYLPFSCKTQPAGCGAPPEVAHGSPMGVTRDHYAVNSKVR
YQCQAGYTQRHLPVIRCMENGQWERPQVECTETSGGNRLHKRSVKSRSRAVSGRREHRKT
L
NT seq
4146 nt
NT seq
+upstream
nt +downstream
nt
atgacttccctgcttctgctgtgtgtgtctttgcccttcatctcagcaactacatcattt
ggacaccatgacgacttggacggcacgctacgtgttagcatcccatcggcggcacctctg
cgccccctgctgggtggcaaggtggtagtgccctgctacttcctggacaacaccgtcagc
gacccgggcgccccgaccatcgccccgctctcccaccgcatcaaatggacctttatcacc
aaggagaatatcaccaccgtcctggtggcaacagagggcaaagtccacgttgagagggat
tacctggacagagtaacgatggtcaactacccgatagtgtccaccgacgcctctctggag
atcactgagctgaggtccaaagactcgggcacctaccgctgcgaagtcacgcacggcatc
gaggacaactatgacagcgtggacatccaggttcagggtatcgtgttccactatcgagcc
atcaccacccggtacaccctgacatttgagaaggcaaaggccgcttgcatccaaaacagc
gccaccattgcaacccctgcccaactgcaggccgcctacgacgatggctaccaccagtgt
gatgccggatggttgtctgatcagactgtcaggtaccccatccatgagcctaggaaggaa
tgctacggagacaaggaaaacttccctggcgtgagaacctatggtgtgagagacgtcaat
gagacttatgacgtgtactgttttgcggagaagatggcaggcagagtcttctactccatg
tcagtagagaagttcaccttccaagaagctgatgatcagtgcactaaactgggtgccaga
ctggccaacaccggagagctttacctggcctggaagggcggcatggatgtgtgtaatgcc
ggctggttgggcgacaggagcgtgcgctaccccatcaacattcgcaggcctcagtgtgga
ggcgggctcctgggagtccgaacggtctacctgtttcccaaccagacgggatacccccta
ccgagctcccgttacgatgctatctgcttccaaggtcacgatgacgaaggcgcagttccc
ggcaggatcactcctttcccagacatcatgagcattacccccgcccctggagtttatcca
ggactgacaacccccgctggaggtcaagagatcaagcaaggaggtgtggacattctcacc
aaacctatctcacctccttttacagacgccaccatggctcccactggtgtggtgttccac
taccgacccattacgggtcggtacacactgagctttctggaggcccaacaggcctgcaag
agtattggagcagtcatcgccagtcccttgcagctccaggcagccttcgagaaaggcttg
caccaatgtgacgctggttggctcgctgaccagagtgtcaggtatcccatcgtttcaccc
cgagataactgtgcaggcaatcttcttcaccttccgggagtccgatcctacggcctaagg
ccagactctgagcgttatgatgtattttgctatgtcgaaagtctgcaaggtgaggtcttc
ttcaccagcgactatgacagtttctcctttgaggaggccgtgcagcactgtgaggaactc
aacaccacactggccaccaccggccagatgtacgccgcatggaaccaaggccttgacaag
tgccgcccaggttggctgatggaccgcagtgtccggtatcccatcaaaagctccagatcc
aactgcgggggcggccaagtgggcgtgcacattatctacgctttccccaaccagacggga
tttcccgatgagcactcgcgctatgacgcctactgtttcaaagctgaaacactcaccatt
gggactgacagcaaaagcaccattgacaccatcagtgaaaccatttttgacaagttactg
acagtggatgttatcagaaagacaacggtcgcagtcgatcacgtcattcctactctcgaa
ccatcggtgggttacaatgacacccaaacaattctgaacgctacagaaatcgaagatgtt
atccaaaggacaaacatcacaacccagctaattgcacctactgttccactggatggttct
gcatctggatcaggcgatgcttcagccagcggggatcttcaaatctcaggcgatcattca
gccagcggggatcttcaaatctcaggcgatcattcagcaagtggggaccttcagatctca
ggcgatcattcagccagtggggatcttcaaatctcaggcgagtccagcaccaccagcggg
agcggagtgtctggctcaggactggacatcaccttcagtggacacacagacatcctgtca
ggagaccattctgcctctggtgacccgcaaggagcagagggtggcagcgcaatcttcacc
tcaggagactcctatagtgcatcaggatctgggtccggttttgttgtgtcagggtcaggc
tctgcaaggggcagtggagacattagtggcagcagtggtgacattctgatcaatatactg
gatggaaaagagaaagaactggtgatcccaaccctcactgagcaggagttaggtagtgga
gtcttgtgggcgtcaggtatgtccgggtcaggaagcatgtctggatcaggaggtatgtcc
gggtcaggcagtggaatttctggtatcacttttacggtcaacagtgccattgacatgaca
gttcagcaatcaggagagcaggagttgtacggatctgcagaaatgtccggctcaggatca
atttccggatcaggctccttgtctgggtcaggcatcagtggattttctggcatcaccttt
acagacagcagtggcgttgacctaacagtccttcaatcaggagagcaggagttgtatggg
tcttctgaaatgtccggttcaggatctttgtctggatctggctctggctctttgtcaggg
tcaggcatcagtggattttccagcatctccttcacagacaacagtgccattgacttaaca
atccagccatcaggagatcaggagttgtctggatctcatccctatgcatcgggctatccc
agcggctttccgagtggttttgcatctggtctttcgggcagcggttctgcctctggccaa
ccaacccaaacggacgatgatgtcatctttctaacaactgacgggctgaaggaagttacc
gtttcccctcaggtgcatcattcagaagagggacgcggggttgtagaaattagtggccag
gaaagtggctcgggaacccctcttcagatctctagcagtggcgagccctcaactgccggg
gtttctatagcttttcctcctggatctacaatgacctatccagacaacaatggatcatct
ggatacgaggaagaggaggctacagtcgtcgttctgactccagatcctgcgtacgtcagc
ccaaccacagcaccgtcgatttcactggcgacacctcccgttgtggaacagccacaagta
gaagaggctgtacacggttgtcccgagggttggttggagttcaggggaagctgttacctc
cactttgccgacagacacacctggtcagatgccgagcaacgttgccaggaactcaatgcc
cacctggtcagtgtcacatctgaagaggagcagcagtttctcaactctaaaggtcaagac
tatgagtggatcggactcaatgacaaagaagtccagaatgaattccgctggacagacggc
agcgccctgacgtatgagaactggagacctaaccaacctgacaactacttcaactccggg
gaggactgcgtggttatgatcgggcacgagggaggccaatggaacgacgttccttgcaat
tactaccttcccttctcgtgcaagactcaacccgcggggtgcggagcgcccccagaggtg
gctcacggctcaccgatgggcgtcaccagagatcactacgccgtcaactccaaagtgcgc
taccagtgtcaagcgggctacacgcagcgccacctgcctgtcatacgttgcatggagaac
ggacaatgggagaggccacaagtggaatgcacagaaacatccggcggcaacaggctacac
aaacgatcggtgaagagcagaagtcgagcagtcagcggccgacgggagcacaggaagacg
ctttga
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integrated database retrieval system
