Syngnathus scovelli (Gulf pipefish): 125970076
Help
Entry
125970076 CDS
T08785
Name
(RefSeq) unconventional myosin-Va isoform X1
KO
K10357
myosin V
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
125970076
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125970076
04131 Membrane trafficking [BR:
sscv04131
]
125970076
03029 Mitochondrial biogenesis [BR:
sscv03029
]
125970076
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
sscv04812
]
125970076
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
125970076
mRNA cycle factors
P-body specific factors
125970076
Membrane trafficking [BR:
sscv04131
]
Others
Actin-binding proteins
Myosins
125970076
Mitochondrial biogenesis [BR:
sscv03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
125970076
Cytoskeleton proteins [BR:
sscv04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Myosins
125970076
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myosin_head
DIL
IQ
AAA_22
AAA_16
nSTAND3
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
125970076
NCBI-ProteinID:
XP_049577986
LinkDB
All DBs
Position
6:complement(6559672..6573043)
Genome browser
AA seq
1813 aa
AA seq
DB search
MAGPELYTKHARVWLPDSVEVWKSAKLLKDYAPGNQTLFLLLDDGTEVEYKLDPRTNNLP
PLRNPNILVGENDLTALSYLNEPAVLHNIKVRFIDSKLIYTYCGIVLVAVNPYESLPIYE
ADIIHAYRGQDMADMDPHIFAVAEEAYKQMASDQQNQSIIVSGESGAGKTVSAKYAMRYF
ATVSGSSGEADIEERVLASNPIMEALGNAKTTRNDNSSRFGKYIEIGFDKKQRIIGAHMR
TYLLEKSRVVFQAYGERNYHIFYQLCASSHLPEFKSFKLGDADDFHYTNQGHNPVIDGVD
DVKDLGNTRRAFSLLGIGESHQMEIYQILAAILHLSNVEVINHSGDRSSISTNDFHLLVF
CELMDVPRGEMAHWLCHRKLQTTTETYVKSLSKSNAVNGRDALAKHIYARLFSWIVGCIN
NVLKSAIKQHSFIGVLDIYGFETFDTNSFEQFCINYANEKLQQQFNLHVFKLEQEEYMKE
EIPWTLIDFYDNQPCINLIEAKLGILDLLDEECKMPKGSDSTWCQKMYNNLLKQKAHFEK
PRLSNSAFIVHHFADQVEYQCDGFLEKNKDTVNEEQICVLQKSKFEFLLKLFVGNDKATS
STNRPASSTKRSGQLQRGNKKTVGLQFRQSLHLLMDTLNATTPHYVRCIKPNDQKVPFSL
DPLRAVQQLRACGILETIRISAAGFPSKWTYQEFFCRYWVLMKQKDVLRDVKQTCQNLLK
KLIQDGNLYQFGKNKIFFRAGQVAYFEKLRAERLRRACVSIQKTIRCWLARKKYLRMKQS
AVTVQRYVRGHQARRYVRFLRRTKAAVAIQRNVRMWAARRHYQKLRSASIVIQCFFRAYA
ARKMYYKILYEEKALVIQKWVKGWLARQRYRRARAHIILLQCCVRRILAKRELKKLKVEA
RSVAHLKNLNVGMENKIMQLQHKLDEQHKDVRELSERLNAAAKIQDMERERHCKEIESLQ
RSEQKAKAKTERLPSLMEQLSFLQRELENTRGEKEVLEEQNNIYKEQTQQVVEELNMKNG
LLNDEKENLNQVILEQKQQLTEVKSQVENTEKLQEELAEERARYQSLLSEHLHLQELHKD
LKEELQRRLSPCKKTEYTSNLPKCNPIIDSTTGQDSSMDKVDETPSNVDLPLILKLQRRV
RELERDKQSLQRHLDEKEAQEEEAKDVEEELTVGRAELDLESLKRQELESENKKLKQDLS
ELRKSLTSENSEMLPPAVGSTTYNVLLEQLDSSNEELKLRKEEVLLLQSHIVRQEAMKYK
DSALGEGVNLNLSEVPLFQDTDRPTDIHTLNEDGELWLAYEGLKETNRVLECQMQKLERQ
HGERYEKLLEEVNTLKQEKEQQQKLLAQTLLLPEDARIEAGLELEITRLTLENLELMEQQ
DKQDKTIVNLKKDLQLYKSRVEEFQAQQRKASISTNSPAKEVSIPRKEREYQGMLEYKEG
EEGRLVKSLVLDLKARGVAVNFLPGLPAYIIFMCLRYADRVNDDQRVSTLLNSVLCSVKG
VIKRRGKDFDVSSFWLSNTSRLLNCLKQYSGDDTFKKHNTAKQNEHCLTNFELTEYQAVF
ADLAVQIYCRLIESMEDTLQPLIVSSMFEHETIQGVLGSKPTGLRKKSSGSLEDDSVTVE
VLLQQIGLWHATMIKHGMDSGLIKQVVRQQFYMICAVTLNHLLLRKDMCSWSKGLQIRYN
VWQLEEWLAERQLADCGAKEMLEPLVQAAQLLQVNKKTEADAQAICNMCTGLTTAQIVKV
LTLYTPVIEFEERVTTTFIATIRDILKDREESSTLMMDAKKVFSVTLSFSPSTVALETIQ
IPISLKLDFLNRI
NT seq
5442 nt
NT seq
+upstream
nt +downstream
nt
atggcaggtccggagctttacaccaagcatgcccgtgtatggctcccggattccgtggaa
gtgtggaaatcagcaaagctactcaaagattatgctcctggcaaccagacgttatttctc
ctgctggatgatggcactgaggtggaatataaactagacccccgaacaaacaaccttcca
cctttgaggaaccccaacatcctggtgggggaaaatgacctcacggctcttagctacctg
aatgaaccggccgtcttacataacatcaaagtgcgcttcatcgactccaagttgatttac
acgtactgtggcattgttcttgttgccgtcaatccatatgagagtctgcccatctatgaa
gccgacatcatccacgcctaccgtgggcaagacatggccgacatggacccccacatattc
gcagtggccgaggaagcatacaagcagatggccagcgatcaacagaaccagtccataatt
gttagcggtgagtcaggagccggcaaaaccgtctctgctaagtatgccatgcgttacttt
gctacggtcagcggctcctccggtgaggcggatatcgaggagagagtgttggcctccaat
cccatcatggaggctcttgggaacgccaaaacgacgaggaatgacaacagcagtcgcttc
gggaagtacattgaaatcgggttcgataaaaagcaacgcatcattggggctcacatgagg
acgtatttactggaaaaatccagagttgtttttcaggcttatggagaaaggaactatcat
atattttatcagctttgtgcctcctcacatttaccagaatttaaaagcttcaaattaggt
gatgctgatgatttccactacactaaccagggtcacaatccagtcattgatggagtggat
gatgtcaaagatttaggcaacacaaggagagctttttcactattaggaatcggtgaaagc
catcagatggaaatttaccagattctggcagctattcttcatctcagcaatgtggaggtg
atcaaccattcaggggacagaagcagcatttcgacaaacgatttccatttgctggtgttc
tgtgagttgatggacgtgccccgtggtgaaatggcccactggctctgccacagaaaactc
caaacgaccacggaaacgtacgtcaagagcctctccaagagcaatgcggtcaacggccga
gacgccctcgccaagcacatttatgctcgactcttcagctggattgttggctgtataaat
aatgtgctcaaatcggcaattaagcaacactcgttcattggcgttctggacatttatggg
tttgaaacatttgacaccaatagctttgaacaattttgtatcaactatgccaatgagaag
ctccagcagcaattcaacctgcatgtcttcaaactggagcaagaagagtacatgaaagaa
gagattccatggacactgattgatttctatgacaaccagccatgcatcaatctcatcgag
gcaaaattgggtatcctggaccttctggatgaggagtgcaaaatgccgaaaggttctgac
agtacctggtgtcagaaaatgtacaacaacctgttgaagcagaaggctcactttgaaaaa
ccgaggctatcaaacagtgcttttatcgtccaccactttgcagatcaggtggaataccag
tgtgatggtttcttggagaaaaacaaggacacagtcaatgaggagcaaatatgcgtgttg
caaaagagtaagtttgaatttttgctgaagctgtttgtgggaaatgacaaggcaacgagt
tccaccaacagacccgctagcagcacaaagagatcgggtcagttgcagagaggtaacaag
aagactgttggactgcagtttcgacagtctctacatttgctgatggatactcttaatgca
acgactcctcactacgtacgctgcattaaaccaaacgaccaaaaagtgccgttcagcttg
gacccgttgagggcagtgcagcaactgcgagcatgcggcatcctggaaacgatccgaatc
tcggcagctggattcccatccaaatggacctatcaggaatttttctgtcgttactgggtc
cttatgaagcagaaggatgtgcttcgtgatgtaaaacagacgtgccaaaatctgctcaaa
aagctcatccaggacgggaacctgtatcagtttggtaaaaacaagatcttcttcagagcc
ggccaggtggcctactttgaaaaattacgtgccgagcggctccgaagggcttgcgtcagc
atccagaagaccatccgctgttggctggcccgtaaaaaatacctgaggatgaagcagtct
gcggtcaccgttcaaagatacgtgcggggtcaccaggcacgccgttatgttcgttttctg
cggagaacaaaagcagccgtcgccattcaacgtaatgttcgaatgtgggcggccagaaga
cactaccaaaagctgcgatctgcatctattgtcattcaatgtttcttcagggcgtatgca
gccagaaagatgtactataagattttgtatgaggaaaaagccttggtcatccaaaagtgg
gtaaaaggttggttggccaggcaacgttatcgacgtgcacgggcacacatcatcctactg
cagtgctgcgtacgtcgtatactggccaaacgggaattaaagaagctcaaagttgaggcg
cgctctgtggcgcatctcaagaatctcaatgttggcatggagaacaaaattatgcagttg
caacacaagctagacgagcagcacaaagacgtcagggagctcagcgagaggctgaatgcc
gcggccaagatccaagatatggagagagagcgacactgcaaagagatagaaagtcttcag
aggtccgagcagaaggccaaagccaagacagagaggctcccttcacttatggagcagctc
tcctttcttcagcgggagctggagaacacccgtggtgagaaagaagtcttggaagagcag
aacaacatctacaaggagcagacacaacaggtggtagaggagctaaacatgaagaatggc
ttgctgaatgatgaaaaggaaaatcttaaccaggtcatcctggaacaaaaacaacagtta
acagaggttaaaagccaagtggaaaacactgaaaaactacaggaagagttagcggaagag
cgcgcccggtaccaaagcctgctgagtgaacacctgcacctacaggagctgcataaagac
ctgaaggaggaactgcaacgtaggctgagtccatgcaagaagacagaatacacaagcaac
ttgcctaaatgtaatccaataattgactctactactggacaggacagctcaatggacaaa
gtggatgagaccccctccaatgtagacctgccgctcattctcaagctccagagaagagtg
agagaacttgagcgggacaaacaatcgctacagcggcacttagatgagaaggaagcccaa
gaggaagaagccaaggatgtggaggaggagctcactgttggtagagcagaattggatttg
gaatcgcttaagcgccaagagctagagtctgagaataagaagttgaagcaggacttgagt
gaactgcgcaagtctttaaccagtgagaacagcgaaatgctgccccctgctgtcggctcc
acgacatacaacgtgctgctggagcaacttgactcttctaacgaggagttgaaattgcga
aaagaggaagtgcttcttctccagtcacacatagtccgccaagaggctatgaaatacaag
gactctgcactcggagagggtgtgaatttaaaccttagtgaggttcctttattccaagat
actgacaggcccactgacatccatacgttgaatgaggacggagagctgtggctggcttac
gaaggcttaaaggagaccaacagggttctggagtgccaaatgcagaagctggaaaggcag
cacggtgagaggtatgagaaactgttggaggaggtgaacacgctcaagcaagaaaaagag
cagcagcagaagctgttggctcaaactttgctgctccccgaagatgctcgtattgaagcg
ggtctggagcttgaaattactcggctcacgctggaaaatctggagctcatggagcaacag
gacaaacaagacaagactatagtcaatctgaaaaaagaccttcagctgtacaagagcaga
gtagaagagtttcaagctcaacaaagaaaagcatccatttcgacgaattctcctgccaaa
gaagtgagcatacctcgcaaggagagagagtatcagggaatgttggagtacaaagagggt
gaagagggccgcctcgttaaaagtctggttttagacctgaaggcccgtggcgtcgctgtc
aacttccttcctggccttcctgcttatatcatcttcatgtgtctgcgatacgctgacaga
gttaacgatgatcagcgagtcagcacgttgctcaattctgtgctctgcagcgtcaaagga
gtcattaagcgaagaggaaaagattttgacgtctcgtctttctggttatccaacacgagt
cgactacttaactgtctgaagcaatatagtggagatgatacgtttaagaagcacaacaca
gcgaaacagaacgagcattgcctgaccaactttgagctgacagagtatcaggctgttttt
gccgacctcgccgttcaaatttactgtcggcttattgaaagcatggaggacaccctgcag
cctctcatagtttctagcatgtttgagcacgagacaatccagggggttctgggctccaaa
ccgacaggtctgaggaaaaagagctcgggttccctagaggatgactcggttacagtggaa
gtcctcctgcagcaaattgggctctggcacgccaccatgatcaaacatgggatggactct
ggcctcattaaacaagtggtccggcagcagttctacatgatatgtgctgtcactctgaac
cacctgctgctcaggaaggacatgtgctcatggagcaaagggcttcagatcaggtacaat
gtgtggcagttggaggagtggctggcggagagacagctggccgactgcggtgccaaagaa
atgttggagcctctcgtacaggccgcacagctgctgcaggtcaacaagaagactgaggca
gacgctcaggcaatctgcaacatgtgcacgggcctcaccactgcacagattgttaaagtg
ttgacgctctacacgccagtgattgagtttgaagagcgcgtgacaaccacattcattgca
accattagagacatcttgaaagacagagaggaatcgtccacactgatgatggatgccaag
aaagttttttctgtcacactttccttctcgccctccactgtggcgttggagaccattcag
atccctattagcttaaagctggacttcctcaaccgcatctaa
DBGET
integrated database retrieval system
