Syngnathus scovelli (Gulf pipefish): 125970089
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Entry
125970089 CDS
T08785
Symbol
ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sscv03009
]
125970089 (ighmbp2)
03012 Translation factors [BR:
sscv03012
]
125970089 (ighmbp2)
Enzymes [BR:
sscv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
125970089 (ighmbp2)
5.6.2.5 RNA 5'-3' helicase
125970089 (ighmbp2)
Ribosome biogenesis [BR:
sscv03009
]
Eukaryotic type
Other ribosome biogenesis factors
125970089 (ighmbp2)
Translation factors [BR:
sscv03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
125970089 (ighmbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
DEAD
Viral_helicase1
Helicase_RecD
nSTAND3
ResIII
AAA_16
AAA_22
UvrD-helicase
IstB_IS21
DnaB_C
SLFN-g3_helicase
Flavi_DEAD
PhoH
AAA
NPHP3_N
ATPase
AAA_25
HEM4
Zot
ATPase_2
AAA_31
ABC_tran
UvrD_C_2
Thioredoxin_14
Motif
Other DBs
NCBI-GeneID:
125970089
NCBI-ProteinID:
XP_049578007
LinkDB
All DBs
Position
6:6588738..6594062
Genome browser
AA seq
977 aa
AA seq
DB search
MAVEKFVSKTLELLQEEREAEIDETRAWKENISLKELQNKGVCLLKLHVASQSTGLYGRT
VLVLEPRKHLGLSSLPSNSFGPGDIVGLYDSSGINEMSQISTGIVTRVSQTSISVAFDDS
KDGLSFDTEGPYSLLKLANDVTYKRMKRALNTLNGYNSGPSANLINVLFGEAKPSSHSQP
HEVKFFNSNLDDSQREAVTFALSQRELAVIHGPPGTGKTTTVVEIILQAVKQGQKVLCCA
PSNVAVDNLVERLARCKAKVLRLGHPARLLESIQKHSLDAILAKSDNANIIADIRKDIDK
AFMGMKKKSEKGERGNLRREIGELRKELKTREATALVQILKSADIVLSTNTGACDDGPLK
FLPADHFDWAVIDECAQSLESSCWIALLRARKCILSGDYKQLPATIKSHGAAAKGLSLSL
MERLIQMYGDLVVRMLTVQYRMNSAIMEWASKEMYQGRLTAHSSVEAHLLKDLPGVTCVE
ETSTPLFLIDTASCGLTEMEVADEQSKGNQGEVDIVALHIKALTEAGVNAKDIAVIAPYN
LQVDLLRQKLSARHPELEIKSVDGFQGREKEAVVLSLVRSNRKGEVGFLAEDRRINVAVT
RARRHVAIVCDTQTVQNHDFLKTLVHHITEYGEVRTAFEYLQDIVPQNYIRDHKDTKSDT
LTTQKAERKKAKAVPKKSNGSNTNATKHNNPIKQCTPTPAEEEQKKKQQGEIREMVENFL
KNLSKSELEFPPLFNSHDRLLVHQIAEELGLTHQSKGEGKERCITISRPTAPKEEEKEES
EATVASQEQATPQHPPKESTPESVLDLKSLHIERMKREQQKREENGQQKKQQQISVATKK
SAPAKGKKPTKAGACEIAAAASPDDDFDALIRAVVKADSVCGFVKCKASVLTLGQLCLFC
NRQYCLSHHIPEVHGCGDKAKTHARIRISKEGVLYAGSGTKDKSMDPTKKAHLHRKLDSK
LKDMATQRKTKNKEKDG
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atggcagtggaaaaattcgtttcaaagacactggaacttctccaagaagagagggaagct
gaaatagatgaaaccagggcatggaaggagaacatctcactcaaggagcttcaaaacaaa
ggagtgtgtctactaaaacttcacgttgcaagtcagtccacaggcctgtatggtcgaacc
gttcttgtccttgagccaagaaagcatcttggcctctcatctcttccgagcaatagcttt
ggacctggggatattgttggtttgtatgactccagtggaatcaatgagatgtctcagatc
agcacaggcattgtgacacgggtcagccagacctccataagtgtggcttttgatgattca
aaggatgggctcagttttgatactgagggtccatacagtctcttaaagttggcaaatgat
gtaacttataaacgaatgaaaagggctttaaatacgttaaatggatacaacagtggacca
tctgcaaatctgatcaatgttctctttggagaagctaaaccttcttctcattcccagcca
catgaagttaaattctttaactcaaacttggatgattcccaaagagaagcagtgactttt
gctttatctcagcgagaactggcagtgattcacggacctccaggaactgggaaaaccact
acagtagtggagatcattctgcaagctgtcaaacaaggccaaaaggttttatgctgtgcc
ccttcaaatgtggcggtggacaatttagtagagagattagcccggtgcaaggctaaagtt
ctgaggcttggtcaccctgccagactgctggagtcaatacaaaagcattcgctggatgcc
atcctcgccaagagtgacaacgccaacattattgctgatatacgcaaagacattgacaaa
gcttttatgggaatgaagaagaagagtgaaaaaggagagcggggcaacctcaggagagaa
ataggtgaactgagaaaggagctgaaaaccagggaagccacggccttggtccagattctg
aaaagtgccgacattgtgttatcaaccaacacaggtgcgtgtgatgatgggcctctgaag
ttcctgccggccgatcattttgactgggcagtgattgacgagtgcgcccagtcgctggag
agcagctgctggattgctctgcttcgagcgcgcaagtgcattctgtcaggagactacaag
cagttaccagctaccatcaaatcacacggggcagctgcaaaaggcttgtccctcagtcta
atggagcgactcatccagatgtatggagacttagttgtgcgtatgctaacagtacagtac
cgcatgaacagtgccatcatggaatgggcctccaaagagatgtaccaaggaagactgacg
gcacacagctcagtggaggcacatttgttaaaagatctacctggagtcacctgtgtggaa
gaaaccagcacacctctttttctcattgacactgccagctgcggtctgacggaaatggag
gtggcagatgagcaatccaaaggcaaccaaggtgaggttgacatcgtagcgctgcacatt
aaagcgttgactgaagctggggtgaatgccaaagacatcgccgtaattgcgccgtacaat
ttacaagttgaccttctgcgtcagaaactttctgcaaggcatccagagctggaaatcaag
tcagtggatggttttcaaggcagagagaaagaagctgtggttttgtctttagtccgatcc
aatcgaaaaggtgaagtcggatttctggcggaggacagaaggataaacgtggccgtcaca
cgtgcgagacgtcacgtggccatcgtgtgtgacacccagacggttcagaaccacgatttc
ctcaagacgctggtccatcacatcacagagtacggcgaggtccgaacagcatttgaatac
ctacaagacattgtcccgcagaattacatccgtgaccacaaagacacaaagtctgacact
ttgacgacacagaaggcagagagaaagaaagccaaagcggttccgaagaaatcaaatgga
agtaatacaaacgcaacaaaacacaacaatcccatcaagcagtgcacaccaacacccgct
gaggaggaacagaagaaaaaacaacaaggtgaaattcgagaaatggtggagaactttctg
aagaacctcagtaagagtgaactcgagttcccgccgttgttcaactctcacgaccgactg
ctggtacaccagattgccgaagagctgggcctcacacaccagagtaaaggcgagggcaaa
gaaaggtgtatcaccatctccaggccaacagcaccaaaggaggaggaaaaagaagagagt
gaggcaacagtcgcttcccaggagcaggccactcctcaacaccccccgaaggaatcaaca
cctgaatctgtgttggatttaaaaagtttacatattgagcgaatgaagagggaacagcag
aaaagggaagaaaatggtcaacaaaagaagcagcagcaaatttcggttgctacaaagaag
tccgcccctgctaaaggaaagaagccgaccaaagccggcgcctgtgaaatagcggcggct
gcttcaccggatgatgactttgacgccctcatccgcgccgtggtgaaggcagacagcgtg
tgcggttttgtcaagtgtaaagcctcagtgctaactcttggacagctttgccttttctgc
aacaggcaatattgcctcagtcaccacataccagaggtgcacggctgtggcgataaagcc
aagactcacgctcgaatcaggattagcaaggagggtgttctttacgccggcagcggaaca
aaagacaaatccatggaccccactaagaaagcgcatctacacaggaaactggactcgaaa
ctcaaagatatggcaacacagaggaaaacaaaaaacaaagagaaggatggttga
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