Syngnathus scovelli (Gulf pipefish): 125970092
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Entry
125970092 CDS
T08785
Name
(RefSeq) transcription initiation factor TFIID subunit 4 isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
125970092
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sscv03021
]
125970092
03036 Chromosome and associated proteins [BR:
sscv03036
]
125970092
Transcription machinery [BR:
sscv03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
125970092
Coactivators
SAGA/TFTC/STAGA complex
125970092
Chromosome and associated proteins [BR:
sscv03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
125970092
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
125970092
NCBI-ProteinID:
XP_049578016
LinkDB
All DBs
Position
6:complement(5962016..5967012)
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AA seq
931 aa
AA seq
DB search
MAGASDPLEDMLFNEVDEKAVSDLVGSLESQLGESEPPPASYATDRPDGAPAVATHFSGK
VREQEPQQGHPGATFKLQPAAAQHLPSSSSTSGEGSAGPAVGGAGPQSFGPAASSSPASV
TAVQTLSAQPGAASFQWAPEASGRTASPGMQSLNGTAGVVKLLNSAPAAATAASPTTATT
TSPLAVMAPPANFLPGTQSAAPSAAQHRLPSAAQNGLESKGGPVGPPGAPSTSQLVNHSK
MLVPGQPASGNILAGTPPPPAAARSPVTQPLGPLAVKPAVNGLGQPAVRAAGVVQLQRPG
LATGTVGPASGTIRPAAPHPPLAVRPQQQATIQLPPGFTMPAGMVLVRIETGQLVMVPQQ
VLAQAQAKTQQSPSVTAVPQRPAAPATMRVSTAAPAPAAPQNIRLATPPHTRLLQSPSSS
SSSSSVQAVTVTSVAASVSVKMAPPLKAQTPMATATEATTVAPAATGAAAKSAAAAPMSG
AAVPGSCNRVTVVSQEMQENVKKCKNFLATLIKLASNNSPSPDTSKNVKALVQDLLDAKI
EPEEFTSRLQAELKSSPQPYLIPFLKKSLPALRQSLLSSQQSLSAPPASAYAPSPNAAIR
PRLPISTPGVRMNAPLATVVPCRGGIQTVRAPLVVGVRTPSTLTRAPTAMVTKSVVTLAA
PANQKKLGDPGGGTFRDDDDINDVASMAGVNLSEENARILATSSELVGTKIRSCKDEAFL
PAGLLHRRISDTARRLGVSEVPLEVVNLVSHATQSRLRSLLEKVSALAQHRSDIVKDEEH
HEQTGDVRAQLRFFEQLERLEKQRKDEQEREILLKAAKSRARQEDPEQARLKQKAKEMQQ
QELAQMRQRDANLTALAAIGPRKKRKLDSPGATASSAEVASGASSSSSSLSSPRQPWRQR
ITRVNLRDLIVCLEQDGSTARSLMLYKALLK
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atggcgggagcctccgacccgctggaggacatgctcttcaatgaagtggacgaaaaggcg
gtcagcgacttagttggctcgctcgaatcgcaactgggggagtccgagccccctcccgcg
tcctatgctaccgaccgacccgacggagctccggctgtcgccactcacttctcagggaaa
gtgcgcgagcaagagccgcaacaaggacacccgggggcgacttttaagctccagcccgcc
gccgctcagcatctcccctcttcctcttctacctccggcgaagggagcgccggcccggcg
gtcggcggggccggcccgcagtcgttcgggccggctgcttctagctcgcccgcctccgtg
acggcagtccaaactttgagcgcccagcccggcgccgctagcttccagtgggcacccgaa
gcaagtggtaggacggcgtcgcccggcatgcaaagtttgaacggtaccgcaggagtcgtc
aagttgctcaactctgccccggcagcggcgacggcagcgtcgcccacgacggcgacgacg
accagcccccttgcggtcatggcccccccggccaacttcctccccggaactcagtctgcg
gctccctccgccgcccaacatagactccccagcgccgctcagaacggcctggagtccaaa
ggtgggcctgtgggacctcctggggccccctcaacctctcagctggtgaaccacagtaag
atgctggtgccaggtcagccagcttccgggaacatccttgctgggaccccaccaccccct
gcggcggcccgttcgcctgtcactcagcccctcggccccctcgctgtcaagccggctgtc
aacgggttgggccagcctgcggtgagagcggctggcgttgtccagcttcagagacctggg
ctggcaaccgggactgtcggaccagcgagcgggaccatccggccggccgcccctcatccc
ccattggccgtccggcctcagcagcaagccaccatccagcttccccccgggttcaccatg
cccgcaggtatggttctggtccgtatcgagacgggtcagctggtgatggtgccgcagcag
gtcctggcccaagcgcaagccaaaacacagcagagtcccagcgtgaccgccgtccctcag
agacccgccgcgcccgccaccatgcgagtcagcactgccgctccagctcctgctgcgcct
cagaatatccgtctggcaacacccccccacacgagacttcttcagtctccttcctcttct
tcctcatcctcttcggtacaggccgtcacagtgacgtctgtcgccgccagtgtctctgtg
aagatggccccgcctctgaaggcacagacgccaatggcaacggcgacagaggccacaacc
gtcgctcccgccgcaacgggcgccgcagccaagtcggccgcggcggcgcccatgagcggt
gcggccgtgcccggcagctgcaacagagtgacggtggtgtcacaggaaatgcaggaaaac
gtgaagaagtgtaaaaatttcctggccacactcatcaagctggcgtccaacaactcgccc
tcacccgacacctccaagaacgtcaaagcgctcgttcaggacctcctcgatgcaaagatc
gagcccgaggagttcaccagtcgtctgcaggcggagctcaagtcgtccccacagccctac
ctcatccccttcctcaagaaaagtcttcctgccttgcgtcagtcgctactcagcagccag
cagtcgctgagcgcacccccggcctctgcttacgccccgtccccgaacgccgccatccga
ccccgcttgcccatatcgacgcccggagtccggatgaacgcgccactcgccaccgtggtg
ccgtgtcgtggtggcatacagactgttcgtgctcccctggtggtgggtgtgagaactcct
agcacgctgacacgagcacccaccgccatggtcactaagagcgtggtcacattggcggcg
ccagccaatcagaagaagctgggagacccggggggcgggacttttagagacgacgacgac
atcaacgacgtggcctccatggccggcgtcaacctgagcgaggagaatgctcgcatcttg
gccaccagctccgagctggtcggcaccaagatccgctcgtgcaaggacgaggccttcctg
cccgccggcctgttgcaccgacgcatttcggatacagctcgcaggctgggcgtgagcgag
gttcctctggaggtggtcaacttggtgtcgcacgccacgcagtcgcgactgcgctcgctg
ctggagaaagtttccgcactggctcaacaccgatcggacattgtcaaggacgaagagcat
cacgagcagaccggcgacgttcgcgcccagcttcgcttcttcgagcaactggagcgtctg
gaaaagcaaaggaaggacgagcaagagagggagatcctgctcaaggccgccaagagtcga
gccaggcaggaggatcccgagcaggcccgtctcaagcagaaggccaaagagatgcagcag
caggagttggctcaaatgcgccaacgcgatgccaacctgactgcgcttgccgccatcggg
ccacgaaagaaacgcaagttggactccccgggcgccaccgcctcctccgccgaggtggcg
tcaggcgcgtcctcgtcctcctcgtccttgtcgtcgccgcggcagccttggcgtcagcgc
atcaccagagtcaacctcagggacttgatcgtgtgtctggagcaggatggcagcaccgcg
cgctcgctaatgctctacaaggcgctgctgaagtga
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