Syngnathus scovelli (Gulf pipefish): 125970244
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Entry
125970244 CDS
T08785
Symbol
ddb2
Name
(RefSeq) DNA damage-binding protein 2 isoform X1
KO
K10140
DNA damage-binding protein 2
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03420
Nucleotide excision repair
sscv04115
p53 signaling pathway
sscv04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
125970244 (ddb2)
09124 Replication and repair
03420 Nucleotide excision repair
125970244 (ddb2)
09140 Cellular Processes
09143 Cell growth and death
04115 p53 signaling pathway
125970244 (ddb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sscv04121
]
125970244 (ddb2)
03400 DNA repair and recombination proteins [BR:
sscv03400
]
125970244 (ddb2)
Ubiquitin system [BR:
sscv04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
125970244 (ddb2)
DNA repair and recombination proteins [BR:
sscv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
125970244 (ddb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40
WDR55
Beta-prop_EML_2
Beta-prop_RIG_2nd
Beta-prop_EML
Beta-prop_TEP1_C
EIF3I
Beta-prop_IFT140_1st
Beta-prop_WDR75_1st
WD40_RFWD3
Beta-prop_EIPR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_2nd
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
125970244
NCBI-ProteinID:
XP_049578268
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All DBs
Position
6:19657481..19660746
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AA seq
551 aa
AA seq
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MKSKPSKSDGLKSKKPQVEKRAGGENSGSTLSAKLREKKDAEAYKKGGCVGIQKKTAHGS
ILHYIYKHTLGQSVHTQMRQVRSAAAQLKYKLSPVEKILLAPLFIMYATTSFEEYICVGI
GKVAEYTVNCQSRVFFFFFFNFQCLQEPFVRSLSSYHYHASNLPFDRRVTCLEWHPTNPS
TLVVGSKGGDIELWDYKLRDQKMFIRGNGAGDFIGGMKFCPTDLSRVYVASGEGTLTLQS
FEGLTATVLSRTEDCGHEHHNVCFWYCCVDVSISRQMLVTGDNVGNLLLLGLDGQKIFSD
KLHKAKVTHAEFNPRCDWLLATASVDHTVKLWDLRNMKDKKSFLHDMPHEKAINSAYFHP
SDCSKLLTTDQYNEIRVYSSSDWSKPQQIIRHPHRHFQHITPIKATWHPVYDLIVVGRYP
DDRICQDDQRTIDIFDSNTAELVCQLYDPNVGGIKSINKFNPMGDVIGSGMGVTVVVWDQ
DESLFADDNRPQEETSTSAGRAIRGGRARQQRPTRSRRSGVDQSKLKKKLLSAHQAETTT
KTKCTKRTRKQ
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagcaaaccctccaaatctgatggcctcaaatccaaaaagccacaggtggagaaa
agagctggtggcgagaactctggttcaactttgtcggctaaactacgggagaagaaggat
gcagaggcgtacaaaaaaggtggctgtgtggggattcagaagaaaactgcacatggaagc
atactccactacatctacaagcacactttgggacaaagtgttcatactcaaatgagacag
gtaagaagcgctgctgcacaattaaaatacaagttgtcgccggtggaaaaaatccttttg
gctcctctttttatcatgtatgcaaccacttcctttgaggagtatatctgtgttggcatt
gggaaagtggcagagtacacagtaaactgtcagtcacgtgtttttttttttttttttttt
aattttcagtgtctccaagagccttttgtccgctcactctcttcgtaccattaccacgca
tcaaaccttcccttcgaccggcgagtcacctgcctggagtggcatcccaccaatcccagc
acattggtagtgggctccaagggcggcgacatcgagctgtgggactacaagctccgcgac
cagaagatgttcatcagagggaacggcgccggagacttcatcggagggatgaagttttgt
cccacggatctttccagggtgtacgtggcctccggtgagggcacactgaccctgcagagc
tttgagggcctcacagccaccgttttatccagaacggaagattgtggccacgagcaccac
aacgtatgtttctggtactgctgcgtggacgtctccatcagccgccagatgcttgtgact
ggagacaacgttggaaatctactgctgctgggtttagatgggcagaagattttcagtgat
aaattacacaaagccaaagtgacccacgcagagttcaacccacgctgtgattggctgctt
gcgacggcgtcagtggaccacacagtcaagctgtgggacctgagaaacatgaaggacaag
aagagctttcttcatgacatgcctcacgagaaggctatcaactcagcctatttccatccc
tcggactgctccaagttgctcacaaccgatcagtacaacgagatccgtgtgtattcatcc
tctgattggtccaagcctcaacaaatcatccgtcatccacatagacattttcaacacatc
acacccatcaaggcgacatggcatccagtgtatgacctcatcgtggtgggtcgttacccc
gatgacaggatctgtcaggacgaccagagaactatcgacatctttgattccaacacagca
gagcttgtgtgccaattgtatgatcccaatgttggaggaatcaaatctatcaataaattc
aatccaatgggagatgtgattggctctggaatgggtgtaacagtggtagtttgggaccaa
gatgaatcattgttcgccgacgacaacaggccacaagaggaaacatctacgtcggccggg
cgagcgataaggggcgggcgcgctcgtcagcagcggcccaccagaagcaggagaagtggc
gtggatcaaagcaagctcaagaaaaaactgctttctgcacaccaagccgaaacgacgacc
aagacgaagtgcacaaagcgcacaagaaagcagtga
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