Syngnathus scovelli (Gulf pipefish): 125970359
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Entry
125970359 CDS
T08785
Name
(RefSeq) leucine-rich repeat-containing protein 4C
KO
K07523
netrin-G1 ligand
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
125970359
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sscv04515
]
125970359
Cell adhesion molecules [BR:
sscv04515
]
Immunoglobulin superfamily
NGL family
125970359
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
ig
V-set
LRR_14
Ig_2
LRR_9
LRRNT
DUF7617
Ig_6
Sp38
DUF6821
Syndecan
Motif
Other DBs
NCBI-GeneID:
125970359
NCBI-ProteinID:
XP_049578503
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Position
6:12613691..12654117
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AA seq
643 aa
AA seq
DB search
MTSSQQQQMMRGPRWNQALSNPFFVLLLALQLLVVAGLVRAQTCPSVCSCSNQFSKVICT
RRGLREVPDGISTNTRYLNLQENLIQVIKVDSFKHLRHLEILQLSKNHIRKIELGAFNGL
ASLNTLELFDNRLTTIPNGAFEYLSKLKELWLRNNPIESIPSYAFNRVPSLRRLDLGELK
RLSYISEGAFEGLSNLRYLNLGMCNLKEIPNLIPLVKLDELEMSGNQLSVVRPGSFKGLI
HLQKLWMMHAQIQTIERNSFDDLQSLVELNLAHNNLTLLPHDLFTPLHHLERVHLHHNPW
NCNCDILWLSWWLKEMVPANTSCCARCSSPAHHKGRYIGELDQNYFHCYAPVIVEPPADL
NVTEGSAAELKCRASSLTSVSWITPNGSIMTHGAYKIRISVLNDGTLNFTNVTMQDTGTY
TCMVSNSAGNTTASATLNVSSTENSSFSYFTTVTVETIETPHNEGFTTIVQQKGGPTPSA
HTWKSVSATSSTTTVQTPVSTRATEKTYTIPVTEFGGEGSLNGLDEVMKTTKIIIGCFVA
ITLMAAVMLIIFYKMRKQHHQQNHHVPTRTIEIINVDEDCVTGGPGMEGHLTLPPLEHEH
LNHYNAYKTAYNHASTINSIHSSAHEPLLIRANSKDNVQETQI
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgacctcctctcagcagcagcagatgatgcgaggtcctaggtggaaccaggccttgtcc
aaccctttttttgtgctgctcctggccctacagcttttggtggttgcgggtctggttcgt
gctcagacgtgcccttctgtctgctcctgtagtaatcaattcagcaaagtcatctgcaca
cggagggggctacgagaggtccctgatggcatttctaccaacacacgctacctgaatctc
caagaaaacctcatccaagtcattaaagtggacagcttcaagcacctaagacatttggag
atcctacagctgagtaaaaatcacatacgcaaaattgagcttggagccttcaatggactt
gctagcctcaataccctggagctttttgataatcgcctcaccaccatcccaaatggggca
tttgaatacctgtccaaactaaaggagctatggctgaggaataatcccattgagagtatt
ccctcctatgccttcaacagggtgccctcattacgacggctggaccttggggagcttaaa
aggctatcctacatatctgagggagcctttgaagggctgagcaatcttcgctacttaaat
ctgggaatgtgcaatctgaaggaaattcccaaccttattcccctggtgaagctggatgag
ctggagatgtcagggaaccagctgtctgtggtccggcctggctcttttaaggggctcatt
catctccagaagctatggatgatgcatgcccaaatccagactatagagagaaactcattt
gatgatctccagtcattagtggagctaaatttagcccacaacaaccttacactcttgccc
catgatctgttcactcctttgcatcatctggagcgagtgcatttgcaccacaacccttgg
aattgtaactgtgacatcctctggctaagttggtggctcaaagagatggtaccagcaaac
accagctgctgcgcccgttgcagctccccagctcaccataaagggcgctacattggtgag
cttgaccaaaactactttcactgttatgctcctgttattgtggagcccccagctgaccta
aatgtgacagaggggagcgctgcagagttgaaatgtcgagccagctctttgacttctgtg
agctggattacacccaatggttccatcatgacacacggtgcatacaagattagaatctca
gtgctgaacgatggcactctgaacttcaccaatgttaccatgcaagacactggtacatac
acgtgcatggtcagtaattcagccggtaacacaacagcgtccgccacactcaatgtgtcc
tcaactgaaaacagcagcttcagttactttaccacagtgaccgtagagacgatagaaacg
ccacataatgaaggtttcaccacgattgtgcaacagaagggaggccccactccctcggct
catacatggaagtcggtttcagccacttcttcaactaccacagtgcagacccctgtctct
acccgtgccacagagaagacctacacaatccctgtcactgaatttggtggcgaaggctcc
ctcaatggcttggacgaggtcatgaagacaaccaagatcataatcggctgttttgttgca
attacgctcatggcagctgtcatgctgatcatcttctacaaaatgcgtaaacagcaccac
cagcagaatcaccacgtgcccacgcgcactattgagatcattaatgtggacgaggactgc
gttacaggaggacccggcatggagggccacctgactttgcctcctcttgaacatgagcac
ctaaaccattacaacgcctacaaaacagcatacaaccatgcctccactatcaactccata
cacagctcagcgcatgaacctttgttaatccgggcaaactcaaaagacaatgtacaagag
acccaaatctga
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