Syngnathus scovelli (Gulf pipefish): 125970373
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Entry
125970373 CDS
T08785
Symbol
lingo1a
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sscv04131
]
125970373 (lingo1a)
Membrane trafficking [BR:
sscv04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
125970373 (lingo1a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_5
LRR_4
I-set
LRR_1
Ig_3
ig
Ig_2
LRR_9
LRR_Zer-1
Ig_C17orf99
V-set
LRRNT
Motif
Other DBs
NCBI-GeneID:
125970373
NCBI-ProteinID:
XP_049578535
LinkDB
All DBs
Position
6:15444824..15606863
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AA seq
615 aa
AA seq
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MAAQEATGHSFLVTCWQPVLILMLGTVLSGSTTSCPSRCECNVPERSVMCYRKKLMTVPE
GIPAETRLLDLSKNRIRTINPDEFANLAILEHLELSENTISTIEPGAFNNLFGLRTLGLR
SNKLKLIQLGVFTGLSNLTQLDISENKIVILLDYMFQDLYNLRSLEVGDNDLVFISHRAF
HGLSSLQHLSLEKCNLSSVPTEAFTHLHSLITLRLRHLNINVIRDYSFKRLFRLKVLEIA
NWPYLDTMTPNCLHGLNLTSLTIANANLTSIPYVALRHLVYLHFLNLSYNPIHTIDGNKL
HDLLRLQEFHLVGGRLAMIEPYSFRGLNYLKILNVSGNSLTTLEESAFHSVGNLETLALY
DNPLACDCRMLWVFRRRWRLNFNRQQPTCASPEFVQGKEFKDFPDVLQPNYFTCRKSRIK
DRKPQQQFVDEGAIVHFACEADGDPAPVIMWLSPQKKFITTKTIGRISVLPDGTLEVRYA
QIQDNGTYVCVASNAGGNDTSLAHLHIHSYSPDWPFQPNKTFAFISNQPAETGANDTRAN
VPFPFDIKTLIIATTMGFISFLGVVLFCLVLLFLWSRGKGNTKHNIEIEYVPRKSDAGMS
SGTADAPRKFNMKMI
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atggcggctcaggaagcgaccgggcacagcttcctggtgacgtgctggcagcccgttctg
atcctgatgctgggcaccgtgctgtccggttccaccaccagctgcccatcccgctgcgag
tgcaacgtcccggaacgtagcgtgatgtgctaccgcaagaagctcatgacggttcccgaa
gggatccccgccgaaacccggttgctggacctcagcaagaaccgcatcagaaccatcaac
cccgacgagtttgccaacttggctatcctggagcatctggagctcagcgagaacaccatc
tccacgattgaacccggcgcgttcaataacctttttggcttacggacactgggactgcgt
agcaacaagctcaagctgatccagctcggggtcttcacgggcctgagcaatctgactcag
ctggacattagtgagaacaagatcgtcatcctgctggactacatgttccaggatttgtac
aacctacgctcgttggaggtgggcgataacgacctggtttttatctcccatcgcgctttt
cacggcctgagtagcctccagcatttgagccttgaaaagtgcaacctgtcctccgttccg
acggaggccttcacccacttgcacagtctgatcacgctcaggctgcgccacctcaacatc
aacgtgattcgggattattcctttaaacgtctcttcaggctcaaagtgctggagattgcc
aattggccctatttggatacaatgaccccaaattgcttgcacggattaaacctgacctct
ctgaccattgcgaacgctaacctgacctccattccttacgtggctctccgccacttggtg
tacttacactttctcaacctttcctacaacccgatccacaccatcgatgggaataaactg
cacgatctgctgcgtcttcaggagtttcacctggtcggagggcgactggccatgattgag
ccctactctttccggggtctcaactacctgaagattctcaacgtttcggggaactccctg
accactctagaggagtcggcgttccattcagtgggcaatttggaaaccctggccctgtac
gacaatcccctggcctgcgactgtcgcatgttgtgggtcttccggcgacgctggcgactc
aacttcaaccggcagcagcccacctgcgcctcccccgaattcgtccaaggcaaagagttc
aaggactttccggacgtcttgcagcccaactacttcacctgtcgcaaatccaggattaag
gatcgcaagccgcagcagcaatttgtcgacgagggcgccatcgttcacttcgcctgcgag
gccgacggcgatccggctccggtgatcatgtggctatccccgcagaagaagttcatcacc
accaaaaccatcggaaggatctccgtgttgccggacgggaccctggaggtccgctacgct
cagattcaggacaacggaacgtacgtgtgcgtagctagcaacgcgggcggcaacgacacg
tctctggctcacctgcacattcacagctattcgcccgattggcccttccaacccaacaag
acttttgcgttcatctccaaccagccggcggagaccggcgctaacgacacgcgagctaac
gtcccgttcccctttgatatcaagacgttgatcatcgccaccacgatgggcttcatttcc
tttctgggcgtggtcctgttttgcctggtgctgctcttcctttggagcagaggcaaaggc
aacaccaagcacaatatcgaaatcgagtacgtgccgcgcaagtcggacgctggcatgagc
agcggcacggccgacgctcctcgcaagttcaatatgaaaatgatttaa
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