Syngnathus scovelli (Gulf pipefish): 125970425
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Entry
125970425 CDS
T08785
Symbol
poc1b
Name
(RefSeq) POC1 centriolar protein homolog B
KO
K16482
centriolar protein POC1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sscv03036
]
125970425 (poc1b)
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
sscv03037
]
125970425 (poc1b)
Chromosome and associated proteins [BR:
sscv03036
]
Eukaryotic type
Centrosome formation proteins
Centriole proteins
125970425 (poc1b)
Cilium and associated proteins [BR:
sscv03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
125970425 (poc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_2nd
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_EML
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_IFT140_1st
WDR90_beta-prop_4th
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_RIG_2nd
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
Beta-prop_Vps41
Beta-prop_DCAF4
Beta-prop_IP5PC_F
Beta-prop_RIG_1st
Beta-prop_NUP159_NUP214
Ge1_WD40
Motif
Other DBs
NCBI-GeneID:
125970425
NCBI-ProteinID:
XP_049578673
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All DBs
Position
6:complement(18441111..18456470)
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AA seq
514 aa
AA seq
DB search
MASVLDDPSMERLLKGHKDSVTCVHFNPNSKLLASSSRDKSLMIWNLSAKGRSLRFINHQ
DAVTAVQFCPVGNLVATSSKDKTVRLWKPSLKGESTVFKAHTAAVRSVAFSHDGVRLVTA
SDDKSVKIWSVARRCFICSLNQHTNWVRCARFSPDSRLVVSCGDDRTVRLWDTSSKNCIN
CFTDYRGSSTYVDFNSRGTCIASSGVDNALQIWDIRTNKIIQHYLVHSASVNSFSFHPSD
NYLISGSSDSTIKILDLLEGRLIYTLHGHKGTVLTVAFSRTGEFFASAGIDSQVMLWKTN
FDAKSYREVLEQHNRRATPNPPPHLTDIHPRVPHPHPTHTVDIQVGPGLTDTHSSEPYIV
ELQEGPHQDADHVNDVHQCIVEGYAHDSPSPVALTTEDEGWTKEEIGAEASRWKRRGDKG
KRHRVRDVRTRREDEDANWHHGESAPQMDPSQAPLGKPPVINSILQQIFKQLDVLTQTLS
ILEERLSLTEDQLQDRLTKTQPTGRPPHKPPDHL
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggtgctggatgaccccagcatggagaggctgcttaaaggccacaaggattcg
gtcacctgcgtacattttaatccaaactctaaattattagcgtcgagctcccgcgataaa
agcctgatgatctggaatctgtcagcgaaagggaggtccttgcgtttcatcaaccatcaa
gacgccgtcacggccgtgcagttctgccccgttggcaacctcgtggcgacctcgtccaag
gacaaaacggtgcgactgtggaagccgtccttgaaaggggagtcgacggtatttaaggcg
cacacggctgccgtacgcagcgtggcgttctcccacgacggcgtgaggctggtgacggca
tcggacgataagtcggtgaagatttggagcgtcgcccggcgatgttttatctgctcgctc
aaccaacacaccaactgggtacgctgtgctagattttcgccggacagtcgccttgttgtg
tcctgcggggatgatcgcaccgtcaggttgtgggacacgtccagcaaaaactgcatcaac
tgcttcactgattaccgcggatcctcgacctatgtggacttcaactcaagaggcacgtgc
atcgcgtcgtcgggtgttgataacgcacttcaaatctgggacatacgcactaataagatc
atccagcattacttagtccacagcgctagtgtcaacagcttctccttccacccgtctgat
aactacctgatcagcggctccagcgacagcacaatcaaaatccttgacctgctggaggga
cgcctcatctacacgctgcatggacacaaaggcaccgtcctcactgtggccttttccagg
actggagaattttttgcttctgcgggcattgattcacaagtgatgttgtggaagaccaac
tttgacgccaaatcataccgggaggtcctggagcagcacaaccggcgagccacgcccaac
cccccgccacacctgaccgatatccacccccgggtgccccaccctcacccgacgcacacg
gtcgacattcaggtgggtccgggactaacggacacgcactcatcagaaccatacatcgtg
gagctacaagaaggtccacaccaagacgcagaccatgtcaacgatgtccaccaatgcatc
gtggaaggctacgcccacgacagtccatctcccgtcgcgttgacgacagaagacgaaggc
tggacgaaggaggagatcggggccgaggcaagtcgatggaagcggcgaggggacaagggc
aagagacatcgagtcagggatgttcgaacgcggcgagaggacgaagatgcaaattggcac
catggcgaaagcgccccccagatggacccgtcgcaggcaccattggggaaaccgcccgtt
atcaactccatcctgcaacaaatcttcaagcagctagacgttctcacgcagaccctttcc
atattggaagagcgtctcagcctgaccgaggaccaacttcaggacaggctcaccaaaacc
caacctactggaagaccacctcataaaccaccggatcacctctaa
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