Syngnathus scovelli (Gulf pipefish): 125970470
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Entry
125970470 CDS
T08785
Name
(RefSeq) voltage-dependent calcium channel subunit alpha-2/delta-4-like isoform X1
KO
K04861
voltage-dependent calcium channel alpha-2/delta-4
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04010
MAPK signaling pathway
sscv04260
Cardiac muscle contraction
sscv04261
Adrenergic signaling in cardiomyocytes
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
125970470
09150 Organismal Systems
09153 Circulatory system
04260 Cardiac muscle contraction
125970470
04261 Adrenergic signaling in cardiomyocytes
125970470
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sscv04040
]
125970470
Ion channels [BR:
sscv04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
125970470
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VGCC_alpha2
VWA_N
VWA_3
VWA_2
dCache_1
VWA
CobT_C
VWA_CoxE
Motif
Other DBs
NCBI-GeneID:
125970470
NCBI-ProteinID:
XP_049578744
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Position
6:complement(19830402..19844033)
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AA seq
1093 aa
AA seq
DB search
MKRGLQVAGWLLLWLGVQAQLKIPPETVQQWASVFSSQLRELSTKYSGSLLLQKKLKDVE
PIIKMVDVDGSDLVKDYADQIERMLGSKMKSVKRLAESAEDADLYHDFNTSLKFDYYNSM
LINKLDEDGNSVELGGEFPLEENEHFSKMPVNTQQSTVQVPTNVYNKDPNILNAVYNSEA
LNDVFVGNFLKDPTLTWQYFGSSAGFFRIYPGIKWTPDSNGVAAFDCRNRNWYIQAATSP
KDIIIMVDISGSMKGLKMTIAKHTINTILDTLGENDFVNVIAYTDYVRYVEPCFKGTLVQ
ADLDNREHFKILVEKLHVKGEAKLKNAMKEAFKILNEARVLGQGSMCNQAIMLITDGAME
DFESVFEEFNWPERRVRVFTYLIGREMTFAQNAKWIACNNKGYYTHVSTLADVQENVMEY
LHVLSRPMVINHDHDIIWTEAYMDTVLPKTKELFSTKAQSLLLMTSVAMPVFSKKKETLS
HGILLGVVGTDVPLMEVMKLVPRYMLGAHGYAFLITNNGYILAHPDLRPLYKDGKKLKPK
PNYNSVDLSEVEWEDDDETLRTAMVKGETGSYTLNIRASLENGRRPLFLVNDYFYTNIDD
TPFSFGMVLTQGHGKLMFVGNVSVEEGLHDLTSPDLSIASEWTYCETDIDPAHRKYSQLQ
VALRYLQGKEPDLECDELLLQQTLFDAVVTAPMEAYWNAIMLDDRVEPGVETAFLGTRVG
LTRIMRYAGVETRVAKKFLTPADKDNLFTVDHFPLWYRLAVENPPGSFFYYAINDKGTKY
VVATTSVTVSAQGKTAVAGAVGLQMSLDVMEKTFWAVTKQASDTDCSNVDGLCPLNCESD
DLRCLLVDNHGFILLSKERKEVGRFMGEVDGAVMATLIKMGMYKKVSLFDYQAMCKNSHD
HASGAPRHLLSPLYNLAAIVRWIFSNALMFMLDFNLCGLWHSDYFVDAKAGYHTSHKQKK
VEALVPCETAYPGFMYDTSVKEANSIIKCGRCQKMFVVQRVPDSNLLVVVTEANCDCSRQ
YSPIPLEAKEIKYIATVKCNRMKSQKVRRRPESCHAYHPKENAKDCGGACTISLSLNLFC
TSLLFSGTLLLMT
NT seq
3282 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcggcctccaagtcgccggctggctcttgctgtggctcggcgttcaagctcag
ctgaagatcccgcctgagaccgtgcagcaatgggcgtccgttttctcgtcgcagcttcga
gagctttccaccaagtattccggatcgcttcttctgcaaaagaaactgaaggatgtggag
cccatcatcaagatggtggacgtggacggaagcgatctggtcaaggattacgctgaccag
attgaacgcatgctgggcagcaaaatgaagtctgtcaagcgactcgccgagtcagcggaa
gatgctgacctctaccatgatttcaacacttccttaaagtttgactactacaactccatg
ctgatcaacaagctggacgaggacggcaactctgtggagctgggcggcgagttcccgctg
gaggagaacgagcacttcagcaagatgcccgtcaacacccagcagagcaccgtgcaggtg
cccaccaacgtctacaacaaagaccccaacatcctcaacgctgtgtacaactcagaggcc
ctcaatgacgtttttgtgggcaacttcctcaaggaccctacgctcacctggcaatacttt
ggcagctctgccggcttcttcaggatctaccccggcatcaaatggacgccggacagcaac
ggcgttgcagccttcgactgcaggaaccgaaactggtacatccaggcggccacatcgccc
aaggacatcatcatcatggtggacatcagcggcagcatgaagggcttgaagatgaccatc
gccaagcacaccatcaacaccatcctcgacacgctaggagagaacgactttgtcaacgtc
attgcttacacagattacgtgcgctatgtggagccgtgcttcaagggaactctggtccaa
gccgacctggacaacagggagcacttcaagatactggtggagaagcttcacgtaaaagga
gaagcaaagctcaagaacgccatgaaagaagccttcaagatcctcaatgaggcgcgcgtt
ttgggtcagggcagcatgtgcaaccaggccatcatgctgatcaccgacggcgccatggag
gactttgagtccgtctttgaggagttcaactggcccgagcgcagggtgcgcgtcttcacg
tatttgattggccgagagatgacctttgcccagaacgccaagtggatcgcctgcaacaac
aaaggctactacacgcacgtgtcgacgctggccgacgtgcaggagaacgtcatggagtac
ctgcacgtgctgagtcggcccatggtcatcaaccacgaccacgacatcatctggaccgaa
gcctacatggacactgtgcttcccaaaaccaaggagctgttcagcaccaaggcgcaaagt
ctgctcctgatgacgtcggtggccatgcccgtcttcagcaagaagaaggagacgctgtcc
cacgggatcctcctgggcgtggtgggtaccgacgttcccctcatggaggtgatgaagctg
gtgccccgctacatgctgggcgcgcacggctacgccttcctcatcaccaacaacggctac
atcctggcgcaccccgaccttcgacctctgtacaaggacggcaagaaactgaagcccaag
cccaactacaacagcgtggacctgtccgaggtggagtgggaggacgacgacgagacgctg
cggacagccatggtgaaaggcgagaccggaagttacacgctcaacatccgcgcctcgctg
gagaacgggaggaggcccctcttcctggtcaacgactatttctacacaaacattgacgac
actcccttcagcttcggcatggtgttgacccaaggtcacgggaaactcatgtttgtggga
aacgtgtcggtggaagaagggctccacgacctgacctctcccgacctcagcatcgcctcc
gagtggacgtactgcgagacggacatcgaccccgcccaccgcaagtactcgcagctgcag
gtggccctccgctacctgcagggcaaggagcccgacctggagtgcgacgagctgctgctc
cagcaaaccttgtttgacgcggtggtgacggcgcccatggaggcctactggaacgccatc
atgctggacgacagggtggagcccggcgtggagacggccttcctgggcacgcgcgtgggc
ctgacgaggatcatgagatacgccggcgtggagacgcgcgtggcaaaaaagttcctgacg
cccgcggacaaggacaacctgtttacggtggaccacttcccgctgtggtaccgcctggcc
gtggagaacccgccgggaagtttcttctactacgccatcaacgacaaaggcaccaagtac
gtggtggccactacgtcggtcaccgtgtcagcgcaaggcaagacagccgtggccggagcc
gtaggtctgcagatgtccttggacgtgatggagaagacgttctgggctgtcaccaagcag
gcgagcgacacagactgttccaacgtggacggattgtgccccctcaactgcgaaagcgac
gacctgcgctgcctgttggtggacaatcacggcttcatcttgctgtccaaagagagaaag
gaggtgggccgcttcatgggcgaggtggacggcgccgtcatggccacgctcatcaagatg
ggcatgtacaaaaaagtgtcgctgttcgactaccaggccatgtgcaagaacagccatgac
cacgccagcggtgctccccgccacctgctcagccctctctacaacctggcggccatcgtc
cgctggatcttttccaatgcgctcatgttcatgttggacttcaacctgtgcggtttgtgg
cactctgattactttgtggatgccaaggctggctatcacacctctcacaagcagaagaag
gtggaggctctggttccatgcgagacggcctatcccggcttcatgtatgacacctccgtc
aaagaggcaaacagcatcatcaaatgtggacgctgccaaaagatgtttgtggtgcagcgt
gtcccagacagcaacttgctggtggtggtgacggaggccaactgcgactgttctcgccaa
tacagccccatcccgctggaggccaaagagatcaaatatatcgccaccgttaagtgcaac
aggatgaagtcgcagaaagtacgcaggcgccctgagtcttgccacgcctaccaccccaag
gaaaacgccaaggactgtgggggcgcgtgcaccatctccctgtcattgaaccttttctgc
acctccctgctgttttcgggtacccttctccttatgacataa
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