Syngnathus scovelli (Gulf pipefish): 125970471
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Entry
125970471 CDS
T08785
Symbol
afg3l1
Name
(RefSeq) mitochondrial inner membrane m-AAA protease component AFG3L1
KO
K08956
AFG3 family protein [EC:3.4.24.-]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
sscv01002
]
125970471 (afg3l1)
09182 Protein families: genetic information processing
03110 Chaperones and folding catalysts [BR:
sscv03110
]
125970471 (afg3l1)
Peptidases and inhibitors [BR:
sscv01002
]
Metallo peptidases
Family M41: FtsH endopeptidase family
125970471 (afg3l1)
Chaperones and folding catalysts [BR:
sscv03110
]
Other chaperones and cochaperones
AAA proteases
125970471 (afg3l1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M41
AAA
AAA_lid_3
FtsH_ext
AAA_22
AAA_5
AAA_16
TIP49
RuvB_N
AAA_2
AAA_14
AAA_28
AAA_17
ThcOx
nSTAND3
Motif
Other DBs
NCBI-GeneID:
125970471
NCBI-ProteinID:
XP_049578746
LinkDB
All DBs
Position
6:19824696..19829805
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AA seq
763 aa
AA seq
DB search
MSQLLRLVSAAARPLCCRAALVAARLNAGAVGRRFIGGYTRFGVPSASPTYVSPRGFRVV
RQRLYSTEPQDVKGESGGGRGGRTGGGKRAGGKKDWWSRMQKGDFPWDEKDFRYLAVLAA
GASSTLLYMYFRDGGREITWKDFVHHYLGRGLVERLEVVNKQYVRVILKPGGEGSYVWFN
IGSVDTFERNLETAHLEMGMEASRRPAVVYSTESDGSFLMSMIPTLLLIGFLLFTLRRGT
MGAGPGGGRGGPFSMSESTAKMMKDDIEVKFKDVAGCEEAKLEILEFVNFLKNPQQYQDL
GAKIPKGAVLSGPPGTGKTLLAKATAGEANVPFITVNGSEFLEMFVGVGPARVRDMFAMA
RKNAPCILFIDEIDAVGRKRGGGNFGGQSEQENTLNQLLVEMDGFNTATNVVVLAGTNRP
DVLDPALMRPGRFDRQIYIGPPDIKGRASIFRVHLRPIKLDPNVDKDVLARKMAAATPGF
TGADIANVCNEAALIAARHLHPHVGHKDFEQAIDRVIGGLEKKTQVLQPTEKKTVAYHEA
GHAVVGWFLQHADPLLKVSIIPRGKGLGYAQYLPREQYLYSREQLFDRMCMMLGGRVAES
VFFGRITTGAQDDLKKVTQSAYAQVVQFGMSEKVGQVSFELPRQGEMVLEKPYSEATAEL
IDEEVRALVERAYAHTHQLVRDKKDLVELVGKRLLEKEVLDKADMLELLGPRPFEEKSTY
EDFVEGTGSLDEDTSLPEGLRDWNRQRPAADPDEQARDKQHAI
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcagcttttgaggctggtctcagcggccgcgcgacctctgtgctgccgggctgca
cttgtcgcggctcggttaaacgccggcgccgtcggacgtcgcttcattggcggatacacg
cgcttcggcgtgccgagcgcgtccccaacctatgtgtccccgcgcggctttcgggtggtt
cggcaacgtctttattcgactgagccccaagacgtgaaaggagaaagtggaggaggacga
ggaggacggacaggaggtggcaagagagcaggaggaaaaaaagactggtggagtcgaatg
cagaagggcgacttcccgtgggacgagaaggacttccgctacctggctgtcctggcggcc
ggcgcctcctccacgctgctctacatgtacttccgcgacggcgggcgcgagatcacctgg
aaggactttgtgcaccactacctgggccgcggcttggtggagcgtctggaagtggtcaac
aagcagtacgtgcgtgtcatcctcaagcccggcggtgaagggagctacgtgtggttcaac
atcggcagcgtggacacatttgaaaggaacctggagacggcccacttggagatgggcatg
gaggcgtcgcgccggcccgccgtggtctacagcaccgagagcgacgggtctttcctgatg
agcatgattcccacgctgctgctcatcggcttcctgctcttcacactgcgccgcggaacc
atgggggcggggcccggcggtggcaggggcgggcccttcagcatgagcgaatccaccgcc
aagatgatgaaggacgacatcgaggtcaagttcaaggacgtggccggctgcgaggaggcc
aagctggagatcctggagtttgtcaacttcctcaagaacccgcagcagtaccaggatctg
ggagccaagatccccaagggtgccgtgttgtcgggacctcccgggactggcaagactctt
ctggccaaagccacggccggcgaggccaacgttcccttcatcaccgtcaacggctcggaa
ttcctggagatgtttgtgggcgtcggtcccgccagggtgagggacatgttcgccatggcg
aggaagaacgctccctgcatcctcttcatcgacgagatcgacgcggtgggccgcaaacga
ggcggcggcaactttggcgggcagagcgagcaggagaacacgctcaaccagctgctggtg
gagatggacggcttcaacactgccaccaacgttgtggtcctggccggcaccaacagaccc
gacgtcctagaccccgccctcatgaggcccggacgctttgacaggcagatctacatcggt
cctccggacatcaaaggacgggcgtccatctttcgagtgcacctgcgacccatcaagttg
gaccccaacgtggacaaggacgtgctggccaggaagatggccgccgccacgcccggcttc
accggggcagacatcgccaacgtttgcaacgaggcagcgctgatcgcagccaggcacctc
cacccgcacgtcggccacaaggacttcgagcaggccatcgacagggtcattggaggtctg
gagaagaagacgcaggtgcttcagcccacagagaagaagacggtggcctaccacgaggcg
ggtcacgccgtggtgggctggttcctgcagcacgccgacccgctgcttaaggtgtccatc
atcccccgcgggaagggactgggctacgcacagtacctgccgcgcgagcagtacctctac
agccgcgagcagctcttcgacaggatgtgcatgatgctgggagggcgcgtagccgagagc
gtctttttcggacgcatcaccaccggcgcgcaggacgacctcaagaaggtcacgcagtcg
gcctacgcacaggtggtccagttcgggatgagcgagaaggtgggccaagtgtcctttgag
ctaccgcgtcagggcgagatggtcctggagaagccgtacagcgaagccacggccgagctg
atcgacgaagaggtccgggcgctggtggagcgagcgtacgcgcacacgcaccagctggtc
cgggacaagaaggacctggtggagctggtgggcaagcggctgctggagaaggaagtcctg
gacaaggcggacatgttggagctgctgggtccacggcctttcgaggagaagtccacgtac
gaggactttgtggagggtacgggcagcttggacgaggacaccagcctacccgaaggcctg
cgggactggaaccgccagcgacccgccgctgaccccgacgagcaagctcgcgacaaacag
cacgccatctag
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