Syngnathus scovelli (Gulf pipefish): 125970534
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Entry
125970534 CDS
T08785
Symbol
sf3b3
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125970534 (sf3b3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sscv03021
]
125970534 (sf3b3)
03041 Spliceosome [BR:
sscv03041
]
125970534 (sf3b3)
03036 Chromosome and associated proteins [BR:
sscv03036
]
125970534 (sf3b3)
Transcription machinery [BR:
sscv03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
125970534 (sf3b3)
Spliceosome [BR:
sscv03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
125970534 (sf3b3)
Complex B
125970534 (sf3b3)
Complex C
U2 SnRNP specific factors
125970534 (sf3b3)
Chromosome and associated proteins [BR:
sscv03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
125970534 (sf3b3)
TFTC complex
125970534 (sf3b3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Motif
Other DBs
NCBI-GeneID:
125970534
NCBI-ProteinID:
XP_049578856
LinkDB
All DBs
Position
6:complement(9402529..9418551)
Genome browser
AA seq
1217 aa
AA seq
DB search
MFLYNITLQRATGITHAIHGNFSGTKMQEIVVSRGKIIELLRPDANTGKVHTLLTMEVFG
IVRSLMAFRLTGGTKDYIVVGSDSGRIVILEYHPSKNMFEKIHQETFGKSGCRRIVPGQF
LAVDPKGRAVMIGAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEALEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKVTLETDEEMVTEIRLKYFDTIPVATAMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDEQENLSPIMACQIADLANEDT
PQLYVACGRGPKSTLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVRCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGVEKQDELGEKGTI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVKMQGQDAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPETNHLILIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPEAIFGSPKAGARQWASLVRLVNPIQGATLDQVQLEQNEAAFSVAVCRFHNAG
DDWYVLVGVARDMVLNPRSVAGGFIYTYRLTGGGEKLEFVHKTPVEDVPLAIAPFQGRAL
VGVGKLLRIYDMGKKKLLRKCENKHVPNLVTGIHTIGQRVVVSDVQESLFWVRYRRNENQ
LIIFADDTCPRWVTTACLLDYDTMASADKFGNITIVRLPPNTSDDVDEDPTGNKALWDRG
LLNGASQKADVIVNYHIGETILTLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHLEMHMRSEFPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPHKQKSVAEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttctttacaacatcacgctacagcgtgccactggcatcacacatgccatccatgga
aatttctcgggaaccaagatgcaggagatcgttgtctccagaggaaagatcatagaattg
ctgcgaccagacgcaaacacgggaaaggtccacacactactcaccatggaagtgtttggg
attgtgcgttcactaatggccttcagactcacaggaggaaccaaagattacattgttgtc
gggagtgacagtggtcgtatcgtcatcttggaatatcatccgtctaaaaacatgttcgag
aaaattcaccaggagacatttggcaagagtggttgtcgccgaattgtcccaggacagttt
ttggcagtggaccccaaaggcagagccgtcatgataggggcaatagagaaacagaagttg
gtttatattctcaatagagatgcagctgcacggctgaccatctcttccccactggaggcc
cacaaagccaacacgctggtctaccatgtagtgggtgtggacgtgggctttgagaatccc
atgtttgcttgtcttgaaatggactatgaggaagctgacaatgaccctactggagaagct
gcagcaaacacgcaacagacactcactttctatgagctggaccttggcttgaaccacgtg
gtccgcaagtacagcgaggctttagaagaacatggaaactttctcatcactgttcccggt
ggttctgatgggccaagcggagttctgatctgctctgaaaactacatcacgtataagaat
tttggagaccagcctgacattcgctgtcctatcccacgtcgaaggaatgacctggacgac
ccagagcgtggaatgatatttgtttgttcagcaacccacaagaccaagtccatgttcttc
ttcttagcccagaccgaacaaggcgatatctttaaggttaccttggaaactgatgaagaa
atggtcacagaaatcaggctgaagtactttgacacaattcctgtggcaacagccatgtgt
gtcttgaagactggcttccttttcgtggcctcagaatttggaaatcattacctttaccag
attgcccacttgggtgatgatgatgaggagccagagttctcttctgccatgcctctagaa
gaaggggacaccttcttctttcagccccgccccctcaagaatctggtgttggttgatgag
caggagaacttgtccccaatcatggcctgtcagattgctgatttggccaatgaagacaca
ccacagctttatgttgcgtgtggacgaggacccaaatctactttaagagttcttaggcat
ggactggaggtttccgagatggccgtgtccgagctacccggtaaccccaatgctgtgtgg
acagtacgcagacatatcgaagatgaatttgatgcctatatcatcgtgtctttcgtcaac
gctacgctcgttctgtccattggcgagactgtggaggaggtgacagattcgggattctta
ggaacaactcccaccctctcctgctcgttgctaggtgacgatgccctcgttcaggtatac
ccagatgggatccgccatatcagagcagacaagcgtgtgaatgagtggaagactcctggt
aaaaagaccattgtccgctgtgctgtgaaccagcggcaagtggttatcgcactcacgggt
ggtgagctggtttactttgagatggacccgtcaggccagctaaatgagtatactgagcgc
aaggagatgtctgcagatgtggtctgcatgagtttggccaatgtcccccctggtgaacag
cgttctcggttcttggctgtgggactggttgacaacactgttcgaatcatatcactggat
ccttcggattgtttgcagccattgagtatgcaggctcttccagcccagccagagagtctt
tgtattgttgaaatgggaggggttgagaaacaggatgaacttggagagaaaggaaccatt
ggcttcctctacctcaacatagggcttcagaacggtgtactgctgaggactgtcctggat
ccagtcaccggggatctgtccgataccaggacccgctacctgggctcacgacctgtcaag
cttttcagagtcaagatgcagggacaggatgctgtccttgccatgtccagccgctcctgg
ctcagctactcttatcagtcccgtttccatttgacacctctgtcatatgagaccctggag
tatgcctcaggctttgcttccgagcaatgcccggaaggaatagtggccatctccaccaac
acgcttagaatcttggcattggagaaactcggagctgtcttcaaccaggtggcttttccc
ctgcaatacactcccaggaagtttgtgatacacccagagaccaaccacctcattttgatt
gagactgaccataatgcctacaccgaggcgactaaagctcaaaggaaacaacagatggct
gaggaaatggtggaggctgcaggtgaggatgaacgagaactagctgctgagatggcagcc
gccttcctcaatgagaatctcccagaagccatttttggttcgccaaaagctggcgcgagg
cagtgggcctcgctagtgcggctggtcaacccaattcagggtgcaacattagaccaagtt
cagttggagcagaatgaagctgcgttcagtgttgccgtgtgtcgtttccacaatgcaggc
gatgactggtatgtcctggtgggagtggccagagacatggtcctcaaccctagatcagtt
gcgggtggcttcatctacacttaccgcctcaccggtggtggggaaaagctcgagtttgtg
cacaagactccagtggaggatgtgccgttggctattgcaccattccagggacgggcctta
gtgggagttgggaaactcttgagaatttatgacatgggcaaaaagaaattgctacgcaag
tgtgagaacaagcatgttcccaatctggtcacgggcatccacaccattggccagcgtgtg
gtggtctctgacgtacaggagagtctcttctgggtccgctacaggcgtaacgagaaccag
ctcatcatcttcgccgacgatacgtgtccccgctgggtgacgacggcatgtctgcttgac
tacgacaccatggcctccgctgacaagtttgggaacattaccattgtgcgtcttcctccc
aacaccagcgatgatgtggacgaggatccaacgggcaacaaagccttatgggacagaggg
cttctcaatggagcatctcagaaggctgacgtgatcgtcaactaccacataggggagacc
atcttaaccctacagaaaaccacgctgatcccaggaggctcagagtcactggtctacacc
accctgtctggaggcattggaattttggtcccctttacatcacatgaggaccatgatttc
ttccagcatttagagatgcacatgcgctctgagttcccgccactgtgcggaagggaccat
ctcagctttaggtcctactacttccctgtcaagaatgtgattgacggagacctgtgcgag
cagttcaacagcatggagcctcacaagcagaaaagtgtggcagaggaactagacaggaca
ccacccgaggtctccaagaaacttgaagacatccgcacacgttatgcattctaa
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integrated database retrieval system
