Syngnathus scovelli (Gulf pipefish): 125970547
Help
Entry
125970547 CDS
T08785
Name
(RefSeq) cyclic nucleotide-gated channel cone photoreceptor subunit alpha-like isoform X1
KO
K04950
cyclic nucleotide gated channel alpha 3
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sscv04040
]
125970547
Ion channels [BR:
sscv04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
125970547
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLZ
Ion_trans
cNMP_binding
CDC45
RR_TM4-6
Tim54
NPR3
YjcZ
Zip
Ion_trans_2
EMC3_TMCO1
DUF8060
Motif
Other DBs
NCBI-GeneID:
125970547
NCBI-ProteinID:
XP_049578882
LinkDB
All DBs
Position
10:complement(2565854..2571703)
Genome browser
AA seq
737 aa
AA seq
DB search
MYDQASKARHVTMAKVNSEISSLTRRPLSSHTSDEELAVIENGDSSNNSERALSSKSNRT
LFTGTGAMARLSYFFYMLRNWAFNRMNPEVPQRHDSFLERFRGPDLKEVSGCKSDGQSLD
RNGTMHRKNLGNKWPLATYNMNNCNNTDDKKEDKKEEIKKDQDDKKDEKKDEKKDEKKDE
KKDEKKDEKKDDKKDDKKKEEPPKEIWIMDPATDMYYKWLTVIAGPVFYNLIMIVTRACF
NELQDRFTKLWIFLDYTADFIYFTDTFVRSRTGYLEQGLLVKDAAKLRAKYRTTSQFKYD
MISMIPTDLLFLKFGFNNPEFRFNRLCKISRLFEFFERTETRTSFPNMFRISNLVLYILV
IIHWNACMFFAISKTIGFGTDTWVYPNISHPEHGRLARKYIYSLYWSTLTLTTIGETPAP
VRDVEYLFVIADFLTGVLIFASIVGNVGAMISNMNASRAEFQAKIDSIKQYMQFRKVTKE
LEARVIKWFDYLWTEKKTCDEKEVLKNLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLI
ELVLKLEPQVFSPGDYICKKGDIGREMYIIKEGKLAVVADDGVTQFVVLSDGAYFGEISI
LGIKGSKAGNRRTANIRSVGYSDLFALSKDNLMEALTEYPDAKKALEEKGKAILMKDNLI
DEAVANAGADPKDLEEKLSRLQENLEAMQTKFAKLLAEFTSSQTRMKQRVTQMEAQVKAV
KPEDLSEVVADKDKKVQ
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atgtatgatcaggccagtaaggcccgacacgtcaccatggcaaaagtcaacagcgaaatc
tcctccctgaccagacgtcccttgtccagtcacacatctgatgaggagctggccgtcatt
gaaaatggagacagcagtaacaattccgagagggcactatcttcaaaatccaacaggaca
ctttttactggtacaggcgcaatggccaggctctcttacttcttctacatgctgcgcaac
tgggccttcaacaggatgaaccctgaagtaccgcaaaggcacgactccttcctggagcgt
ttccgaggccctgatctcaaagaagtgtctggctgcaaaagcgacggccagtccttagac
cgcaacggcacaatgcaccggaagaatcttggcaataagtggccgctagctacttacaac
atgaataactgcaacaacacagatgacaaaaaggaagacaagaaagaggagattaaaaaa
gaccaggatgacaaaaaggatgagaagaaggatgagaaaaaggatgagaagaaggatgag
aaaaaagatgagaagaaggatgagaaaaaagatgataagaaagacgacaagaagaaagag
gagcccccgaaggagatctggattatggacccggctacagacatgtactacaaatggctg
acagtcatcgctggtccagtcttctacaacctgataatgattgtcaccagagcctgtttc
aacgaactgcaggaccggtttacaaaactttggatcttcttagactacaccgcagacttc
atctacttcacagacacgtttgtccggtcaagaacaggctacctggaacaaggtctgctg
gtgaaggacgctgcgaagctgcgagccaaatacaggacgacgtcgcagttcaagtacgac
atgatttccatgatccccaccgatctgctcttcttaaaattcggattcaacaacccagag
ttccgattcaaccgcctctgcaagatttccaggctttttgagttctttgagaggactgaa
accagaaccagcttccccaacatgtttcgtattagcaacctcgtgctctatatcctggtc
atcatccattggaacgcctgcatgttcttcgctatctccaagacgattggtttcggcaca
gacacttgggtataccccaacatcagtcacccggaacatggccgcctggccaggaagtat
atctactccctctactggtccaccctgaccctcaccaccatcggcgagacgcccgcgccg
gtgagagacgtggaatacctctttgtcatcgctgatttcctcaccggtgtgctgatcttc
gccagtatcgtcggaaacgtcggtgccatgatctccaacatgaacgcctcccgcgctgag
ttccaggccaagatcgactccatcaagcagtacatgcagttccgtaaggttaccaaagag
ctggaggcccgggtgatcaagtggttcgactacctgtggacggagaaaaagacttgcgat
gagaaggaagttctgaagaacctgccggacaagctcaaggctgaaatcgctatcaacgtc
catcttgacacactgaagaaggtgcgcatcttccaggactgcgaggcgggactccttatc
gagttggtgctcaagctggagcctcaagtcttcagtccgggggactacatctgcaagaaa
ggtgatattggtcgggagatgtacatcatcaaggagggcaagctggcggtggtggccgac
gacggcgtcacgcagtttgtggtcctcagcgatggtgcatactttggggaaatcagcatc
ctgggcatcaagggcagtaaggccgggaacaggagaacggccaacatccgaagcgtgggt
tactctgacctgttcgccctctccaaggacaacttgatggaggcgctcaccgagtaccca
gatgccaagaaagccctggaagagaagggcaaggctatcttgatgaaggacaacctgatt
gacgaggctgtggctaatgccggggcagaccccaaggacctggaggagaagctgagcagg
cttcaggagaacctggaagccatgcagaccaagtttgcgaaactcctggctgaattcacc
tccagccagacacgcatgaagcaacgggtcacccaaatggaggcccaggtgaaggcggtc
aaacctgaggacctctcagaagtggtggccgataaggataagaaggttcagtga
DBGET
integrated database retrieval system
