Syngnathus scovelli (Gulf pipefish): 125970765
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Entry
125970765 CDS
T08785
Symbol
rfwd3
Name
(RefSeq) E3 ubiquitin-protein ligase rfwd3.S isoform X1
KO
K15691
E3 ubiquitin-protein ligase RFWD3 [EC:
2.3.2.27
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sscv04121
]
125970765 (rfwd3)
Enzymes [BR:
sscv01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125970765 (rfwd3)
Ubiquitin system [BR:
sscv04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
125970765 (rfwd3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_RFWD3
zf-RING_2
WD40_CDC20-Fz
zf-RING_UBOX
Beta-prop_WDR5
zf-C3HC4
Beta-prop_THOC3
zf-ANAPC11
WDR55
Beta-prop_WDR3_2nd
zf-rbx1
zf-C3HC4_2
zf-RING_Vps41
zf-RING_5
WD40
Rtf2
Beta-prop_EIPR1
Beta-prop_RIG_2nd
zf-C3HC4_4
EIF3I
WD40_WDHD1_1st
Beta-prop_EML_2
zf-RING_11
CFAP43_N
Beta-prop_WDR3_1st
WD40_Prp19
FPP
Beta-prop_IFT122_1st
zf-Nse
Beta-prop_WDR36-Utp21_2nd
zf-UDP
Beta-prop_WDR36-Utp21_1st
Motif
Other DBs
NCBI-GeneID:
125970765
NCBI-ProteinID:
XP_049579337
LinkDB
All DBs
Position
6:complement(19776673..19786829)
Genome browser
AA seq
664 aa
AA seq
DB search
MELDPLQRSAAAPSIMSDSGSSTEVDEEDDAGGEGEARVAVPLTLPATWAFSQRRAGQGS
AATQSSPVRRRLRHAIRVHYSSQTATLPRGFPNFVLRAPAAAAVQPSSSTEASESDEEEP
GGVAPAPPAHPRLDGPGENAPPDAAADGQREGGDDGAPAAQPPPAVPTFQSEEGDGNTCS
ICFEAWTAVGDHRVAALRCGHLFGFTCIQKWLASQRAAAKCPQCNKKAKRSDIVMLYTPK
LKAVDNSHHESLKRALEEEQSRRRKAELESAQCKLKLQMITTKYGQAQQELQEIRAQMAQ
GGGATAASAAVPASSSSSSHLMAPYKYSQAVVVSANGGCRVVAHCEALNCLLVSQPSARA
VLLPGWGVKKVSLHNSRHSQYIPIHSAHIRALSFNRQNDGLLLSASLDSTLKITSMPSNA
VVQTYNAGKPVWSCCWCLDKPNYVYAGLNNGSVLLYDIRDTSTHVQELQPLRSRAPVVSL
CYVPRAASSAFPCGGLIAGTLEGGVFWEQLDDNTYKPHSLPLEAGGCTGIQVETESRHCL
VTYRAGRLNPMVRCVLMALTRTPQQDAGEPPGCSCSPVQTFSVGPCCKLLTKNAIFPGPH
GSGALVCAGNEATRCTMVWEASSGALLQKIPSDLPVLDISPFAVNGEHFLGTLTEKIVKL
YKWK
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggagttggaccccctccagcgcagcgccgccgctccctccatcatgtccgactctggc
agcagcacggaagtggacgaggaagacgacgcgggtggcgagggggaggcccgagtggcg
gtcccgctcacacttccagccacctgggccttcagtcagaggagggcgggccaagggagc
gccgctacacagtcgtcgcccgtgcggaggcggcttcggcacgccatccgggtgcactac
tccagccagacggccacgctccctagaggcttccccaactttgtgctgcgagcacccgcc
gccgccgccgtccagccctccagcagcaccgaggcgagcgagtctgacgaagaagagccc
ggcggggtggccccggcccctccggctcacccgcgtctcgacggccctggtgagaatgcg
ccccccgatgccgccgcagacggccagagagaaggaggagacgacggagctcccgcagca
cagccgccccccgccgtgccaacgttccaaagcgaggagggcgacggcaacacgtgcagc
atctgcttcgaggcctggacggcggtgggtgaccaccgcgtggccgccctgcgctgcgga
catctctttggcttcacctgcatccagaagtggttggcctcgcagcgcgccgccgccaaa
tgtccgcagtgcaacaagaaggccaagcgctcagatatcgtgatgctctacacgcccaag
ttgaaagccgtggacaacagccaccacgagagcctcaagagggctcttgaggaggagcag
tctcgacggaggaaggccgagttagaatcggcccagtgcaaactcaagcttcagatgatc
accaccaagtatggtcaagctcaacaggagctgcaggagatccgagctcagatggctcaa
ggcggtggcgccactgccgcctctgccgccgtccccgcctcgtcctcttccagctcccac
ctgatggcaccgtacaagtactctcaggccgtggtggtgtccgccaacggaggctgccga
gttgtggcccactgcgaagcgctcaactgcctgctggtctcgcagccctcggcgcgcgcc
gtgctcctgcccggctggggcgtgaagaaggtgagcctgcacaactccaggcacagccag
tacattcccatccacagcgcgcacatccgagccttgagcttcaaccggcagaacgacggg
ctgctgctatccgcctcgctggacagcaccctcaagatcaccagcatgccgagcaacgcg
gtggtgcagacgtacaacgcgggcaagccggtgtggagctgctgctggtgcttggacaag
cccaactacgtctacgcgggcctcaacaacggctcggtactgctctacgacatcagagac
accagcacccacgtgcaggagctccagccgctgcgctctcgggccccggtggtgtcgctg
tgctacgtcccccgcgcggcgtccagcgccttcccgtgcggcgggctcatcgccggcacg
ctggagggcggcgtcttctgggagcagctggacgacaacacgtacaagccgcacagtctg
ccgctggaggcgggaggttgcaccggcatccaggtggagacggagagccgacattgcctg
gtcacgtaccgagccggccgcctcaacccgatggtgcgctgcgtcctgatggcgctgacc
cggacgccgcagcaggacgctggcgagccgcccggctgctcctgctcacccgtgcagacc
ttcagcgtgggcccgtgctgcaaactgctcaccaagaacgccatctttcccggcccgcac
ggaagcggagcgctggtgtgcgctggaaacgaggccacgcgatgcaccatggtgtgggag
gcgtccagcggcgctcttctccagaagattccttccgacctgcccgtgctagacatctcg
ccgtttgccgtcaacggcgagcacttcctgggcacgctgacggagaagatagtcaagctc
tacaagtggaagtga
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