Syngnathus scovelli (Gulf pipefish): 125970845
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Entry
125970845 CDS
T08785
Name
(RefSeq) PDZ domain-containing RING finger protein 4 isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sscv04121
]
125970845
Enzymes [BR:
sscv01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125970845
Ubiquitin system [BR:
sscv04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
125970845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
PDZ_Tricorn
Motif
Other DBs
NCBI-GeneID:
125970845
NCBI-ProteinID:
XP_049579485
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All DBs
Position
6:complement(16719429..16783285)
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AA seq
865 aa
AA seq
DB search
MTSHISAHVRTANAFEPSSVSKLCPERKQTKPMCAECSTFFRQTPSEANLDERMEEPQMK
GEPASCQLGSGQPQPGEGASRAGADCLEQLLALTGALEERRSAWAQRARLLGLEGVEPPG
DQLWRLRQCLAHMDSIALQLFDYYQVNGKELSKSSHEETLESFLPAKDPVVVQVIRRTPS
GRPHGPPQEIHVVDVCTQTDITFEHIVALAKLRPTTPPVPDVCPFLLSDSCHSLHTMEQD
YYEGTDYLSPLPVDADRTQELEYEEVELCRLSSQEKLGLTLCYRTDEEEDVAIYVSEICP
NSIAAKDGRIREGDRILQINGQDVQDREEAMAALSNEECRSIVLLVARPEMQLEEAWLDD
EHSEFLEQLKMEMLEEQRREEMELAAFQEEQESGQREDDDKPTCSTLTQHQDRGRILKER
QDNSERNVLAQIQRRLSQCLRDNRHPEDEDDGEDVAAEGDRYQQLLELKCQIRNSGEYDL
FYSRRSTIECSLGEPGGVQHELRMLNEELRSIELECQNIMQAHKLRKGQQSASPLRGEPG
KGKLADINGRLEKSDKDSSSAYNTAESSRSTPLAMDRSPEHSLQRMVSLTNQRNLRSSLA
AGPSLSPSPVPGCRAPLLGKSSSPDHSNPSESDQMLQPEEEQSRGKPKVRVTQIPYFSPS
HSSQQRQTNIPAHARHYQSYMQLIQQRSAVEYAQSQLSLLSVCNKEPQAAPLLLDEPKME
WKVKIRSDGTRYVTKRPVRDKILRERALKIKEERSGGMTTDDDAMSEMKMGRYWSKEERK
QHLVRAKEQRKRREFMQRSRLESLKENPQSSGEASIIELSHKKMMKKRNKKILDNWMTIQ
ELMTHGTKAPEGAQVHNAFLSVTTV
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcacacatctccgcacacgtccggactgcgaacgccttcgaaccttccagtgtg
tccaaactttgtcccgagcggaagcaaactaaacctatgtgcgccgaatgctcgacattt
ttccgacaaactccgtcagaggcgaacctggatgagaggatggaagaaccgcagatgaaa
ggagaaccggcgagttgtcagctgggaagcgggcagccccaaccgggcgagggcgcctct
cgggctggagcggactgcttggagcagctgctcgccctgactggcgccctggaggagagg
agatccgcttgggcgcagagagctcgactgttggggctggagggtgttgagccgccgggg
gatcaactctggaggctccgtcagtgtttggcgcacatggacagcattgcattgcagctc
tttgactattaccaagtcaatggtaaagagctgtccaagtccagccatgaggagacgttg
gagagcttcctccccgccaaggaccccgtcgtggtccaagtcatccggcggacccccagc
ggccgaccccacggcccgcctcaggaaatccatgtggtggatgtgtgcactcagaccgac
atcaccttcgaacacatcgtggcgctggcaaagctgcggcctacgacgcctcccgtgcct
gacgtctgtcctttcttgctcagcgacagctgtcactcccttcacaccatggagcaggat
tactacgaaggcaccgactacctctcgccgcttccggtcgacgccgacaggacgcaagag
ttggagtatgaggaagtggaattgtgccgactcagcagtcaagaaaagctggggctgact
ctgtgctacaggacggatgaagaagaggacgttgccatctatgtcagcgagatttgtccc
aacagcatcgccgccaaagacggtcgcatccgagagggggaccgcatattacagattaat
gggcaggatgtgcaggaccgagaggaggccatggctgcgctctccaacgaagagtgccgc
agcatcgtcttgctggtggccaggcccgagatgcagctggaggaggcctggctggatgat
gaacacagcgagttcctggagcagctcaagatggaaatgctggaggaacagcggcgcgag
gagatggagttggccgccttccaggaggaacaagagagcggacagcgagaagatgacgac
aagcccacctgctccaccctcacccagcatcaggacagggggcggatcctgaaagagaga
caggacaattccgagcgtaacgtcctggcgcagatccagaggcgcctgtcgcagtgtctc
cgggacaaccggcacccggaggatgaggacgacggcgaggacgtggcggcggagggcgac
cgctaccagcagctcctggagctcaagtgccagatccgcaacagcggcgagtacgacctc
ttctacagccggcgcagcaccatcgagtgcagcctgggcgaaccgggcggagtccagcac
gagctgcgcatgctcaacgaggagcttcgcagtatcgagctggagtgccagaacatcatg
caggcgcacaagctccgcaagggccagcaatcagccagtccccttcggggggagcccggc
aaaggcaaactggcggacatcaacgggcggctggagaagtcggacaaggacagctccagc
gcctataatacggccgagagctcccggagtactcctctggctatggatcgctcccctgaa
cattccctccagaggatggtgagcctcaccaaccagaggaacctccgcagcagcctcgcc
gccggaccctcgctcagtcccagccccgtcccgggttgccgggccccgttgctgggcaag
agcagcagcccggaccacagcaacccctctgagtcggaccagatgcttcaacctgaggag
gagcagagtcgagggaaacctaaggtccgggtgacgcagatcccttacttctctccgtcg
cacagttcccagcagcggcagaccaacatccccgcgcacgcccgccactaccagagctac
atgcagctgatccagcaacgctcggccgtggagtacgcccagagccagctcagcctgctc
agcgtgtgcaacaaggagccgcaggcggcgcctctcctcctggacgagcccaaaatggaa
tggaaggtgaagatccgcagcgacggcacgcgttacgtcaccaagcggccggtgcgtgac
aagatcctacgggagcgagcgctgaagatcaaggaggaacgcagcggcggcatgaccacg
gacgacgacgccatgagcgagatgaagatgggccgctactggagcaaggaggagaggaag
cagcacctggtccgcgccaaggagcaacgcaagcggcgcgagttcatgcagcgcagtcgc
ttggagagcctgaaggagaacccgcagagcagcggcgaggccagcatcatcgagttgagt
cacaagaagatgatgaagaagcgcaacaagaagatcctggataactggatgaccatccaa
gagctgatgacgcacgggaccaaagctccggaaggggcgcaggtgcacaacgccttcctg
tcggtcacgacggtgtaa
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