Syngnathus scovelli (Gulf pipefish): 125970850
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Entry
125970850 CDS
T08785
Symbol
cnot4a
Name
(RefSeq) CCR4-NOT transcription complex subunit 4 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125970850 (cnot4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sscv03000
]
125970850 (cnot4a)
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125970850 (cnot4a)
04121 Ubiquitin system [BR:
sscv04121
]
125970850 (cnot4a)
Enzymes [BR:
sscv01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125970850 (cnot4a)
Transcription factors [BR:
sscv03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
125970850 (cnot4a)
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125970850 (cnot4a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125970850 (cnot4a)
Ubiquitin system [BR:
sscv04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
125970850 (cnot4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-UDP
zf-C3HC4_2
zf-RING_2
Med7
DZR_2
zf-CCCH_2
RDD1
Rtf2
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
125970850
NCBI-ProteinID:
XP_049579498
LinkDB
All DBs
Position
6:16915045..16923301
Genome browser
AA seq
799 aa
AA seq
DB search
MSHSPEMKDDPMECPLCMEPLEIDDVNFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEEIQRIKNEKKQKQNEKKQKVTENRKHLASVRVVQRNLVFVVGLSQRL
ADPEVLKRPDYFGRFGKIHKVVINNSTSYAGSQVQGPSASAYVTYVRPEDALRAIQCVNN
VVVDGRTLKASLGTTKYCSYFLKSMQCPKPDCMYLHELGDEAASFTKDEMQAGKHQEYEQ
KLLQDLYKLNPSFLQPPACGTEKSKSKSGLTQRQNSSNGKDGWPTLSGHSKLANGLSEDR
KSPPLLDYLDQEGLTSDGLDTDLGPGQCTAMSPFSSNCDSNSPSDKASDSIAMVNGDTLQ
QIATSDSPSPPPGLSKPSLVVPISVSDLTARSPFEGAAAESQSLFSDNSNFRHPNPLPSG
LPPFPSNPRTSDWPMTPEPHSLFTSDTIPVSSSTDWQAAFGFGSSSKQQDDDLGFDPFDV
TRKALADLIEKELSVQDRSPASPGPFVQGNNHGPGLLPPNGNAGNSHHFPGGVPRIPQIH
HRAIYSSCSFPGTHSSQTSQQQQQQGRPPWMGIPSRNNLTHLNHSASAASHSNFLDLNLP
PQHSTGLGGIPISENSGSIEGLNVKEWQDGLRALLPNININFGGLPNSSSSSSSSSSNSV
NHIGGPAGISHSLSWDSTASWMDPAIITGIPASAGTSLDCLQDDNPPHWLKSLQALTEMD
GPAGSVAAPTPQPLHGAILDGHLPLHHRAAAAGWAPYLPPATASPASHFHSPPPGFQTAF
RPPGQPATELLQSAAADRH
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atgtcccatagccccgaaatgaaggacgaccccatggagtgccccctgtgcatggagccg
ctggagatcgacgacgtcaacttcttcccctgcacctgcggctaccagatctgccgcttc
tgctggcaccgtatccgcacagacgagaacggcctttgcccggcctgcagaaagccatac
ccagaggaccccgccgtgtacaagcctctgtcacaggaggagatccagaggataaagaac
gaaaagaagcagaaacagaacgagaagaagcagaaggtgacggagaaccgaaagcacttg
gccagcgttcgagttgttcagagaaacctggtcttcgtggtgggactctcacagcgcctc
gccgatcccgaggtcctaaaacgaccagattattttggtaggttcgggaagatccataaa
gtggttatcaacaatagtacatcatatgcaggctcacaggtccagggaccgagcgccagc
gcgtatgtcacctacgtccgccccgaggacgctcttagggccatacagtgcgtcaacaac
gtggtggtggatggcagaacactcaaggcttctttaggcacgacaaagtactgcagttac
ttccttaaaagtatgcagtgtcctaaacccgattgtatgtatctacatgagctaggagat
gaagccgctagcttcactaaagacgaaatgcaggccgggaaacatcaagaatatgagcaa
aaactcctccaagacttgtataaactaaaccctagctttctacaacctccagcatgtggt
acagaaaaatcaaagagtaaatcgggcttaacgcaaagacaaaacagtagcaacggtaaa
gatgggtggcccacgttgtcagggcatagcaaactagccaatggcctttcagaggaccgc
aagtcccctccgctgctagactatctggaccaagaaggtctcacctcagacggtctggat
acagacctgggtcctggccaatgcactgccatgtcacccttctcctcaaactgtgacagc
aacagtcccagtgacaaggcttctgactcaatcgctatggtgaacggagatactctacaa
cagatagccacaagcgactccccctctccccctccgggtttaagcaagcctagcctggtg
gtgcccatcagcgtgtcggatctgacggcccgctcgcccttcgagggcgcggcggccgag
tcacagtcgctcttctcggacaacagcaatttcagacaccccaaccccctccccagcggt
ctgcccccatttcctagcaacccccgaacttctgactggcccatgactccggaaccgcac
agcctctttacgtcagacacgataccagtgtcgtcgtccacggactggcaggcggccttc
ggcttcggctcgtccagcaaacagcaggacgacgacctgggcttcgacccgttcgacgtc
acccgcaaagcgctggccgacctgatcgagaaggagctgtcggtgcaggaccggagcccc
gcctccccgggccctttcgtccaggggaacaatcacgggcccggcctgctgcccccgaac
ggcaacgccggcaactctcaccacttccccggcggcgtgccccgcatcccccagatccac
cacagagccatctacagttcctgcagtttccccggcactcatagcagccagactagtcaa
cagcaacagcagcaaggcagacccccctggatgggcatcccctcgcggaataacctcaca
cacttgaaccactcagccagtgctgcctcacacagtaacttcttggacctgaatctgcct
cctcaacatagcacaggtctgggagggatccccatctcagaaaacagcggctctatagaa
ggcttaaatgtgaaagagtggcaagatggcctccgagctctcctgcccaacatcaacatc
aacttcggaggccttcccaactcgtcgtcctcttcgtcctcgtcgtcctcaaacagtgtt
aaccacatcggcggtccggcgggcatttcgcacagcctgagctgggacagcaccgccagt
tggatggaccccgcaatcatcacaggcatcccggcctcggcggggaccagtttagactgt
ctccaggacgacaaccccccacactggctcaagtccctgcaggcgctcacggagatggac
ggtccggccggctcggtggcggcgcccaccccccagccccttcacggcgccatcctagat
ggccacctccccctccaccacagagccgccgctgccggctgggccccttacctgcccccc
gccacagcaagccccgccagccatttccactcccccccgccaggcttccagacggccttc
agacccccgggacagcccgccacagagttgctacagagtgccgctgcggaccgccactga
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