Syngnathus scovelli (Gulf pipefish): 125971125
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Entry
125971125 CDS
T08785
Symbol
roraa
Name
(RefSeq) nuclear receptor ROR-alpha A isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sscv03000
]
125971125 (roraa)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
sscv03310
]
125971125 (roraa)
Transcription factors [BR:
sscv03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
125971125 (roraa)
Nuclear receptors [BR:
sscv03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
125971125 (roraa)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
125971125
NCBI-ProteinID:
XP_049580057
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Position
6:18824625..18963085
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AA seq
519 aa
AA seq
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MESPPDPASDPGNSASEPATPARESPVSLETLRKADHPAPVRRQTCSSTNRGISVTKKTH
TSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKNCLIDRTSRNR
CQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRLQQQQRDHQQQPGEAEPLTP
SYGLSANGLTELHDDLGGYMDGHTPDGTKPDSAISSFYLDIQPSPDQSGLDINGIKPEPI
CDFAPGSGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHMETCQYLREELQQMTWQAFL
QEEVESYQNKPREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVV
FVRMCRAFDSQNNTVYFDGKYAGPDVFKSLGCDDLISSVFEFGKNLCSMHLSEDEIALFS
AFVLMSADRSWLQEKVKVEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTLRALCSRH
TEKLTAFKAIYPDIVRAHFPPLYKELFGSDFEQSMPVDG
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggagtccccgcctgatccagcgagcgacccgggcaacagcgcctcggagccggctacc
ccggccagggaaagcccggtaagcctggagacgctccggaaagcggaccatccagccccg
gttcgaaggcaaacctgctcgagcaccaatagaggtatctcggtaaccaagaagacacac
acatctcaaatcgaaataattccctgcaagatctgtggagacaaatcatcaggcatccat
tacggtgtgataacatgcgaaggctgtaagggcttcttcaggaggagtcagcagagcaat
gcggcctactcctgcccccgtcagaagaactgcctgatcgaccgcaccagccgcaaccgc
tgccagcactgccggcttcagaagtgcctggcggtgggcatgtcacgggatgcggtgaag
tttggacgcatgtccaagaagcagcgagacagcctctacgccgaggtccagaagcatcgg
ctccagcagcaacagcgggaccaccaacagcaacccggggaggcggagcctctcacacct
agctacggcctctcggccaacggcctgacggagctccacgacgacctcggcggctacatg
gacggccacacccccgacggaaccaaaccggactcggctatcagcagcttctacctggac
atccagccctccccggaccagtccggcctggacatcaacggcatcaagcccgagcccatc
tgcgactttgcccccggatctggcttcttcccttactgctccttcaccaacggagaaacc
tcccctaccgtgtccatggcagaactagagcacttggcccagaatatctccaaatcacac
atggagacatgtcagtacctgagagaggagcttcagcagatgacctggcaagccttcctc
caggaggaggtggagagctaccagaacaagccgcgggaagtcatgtggcagctgtgcgct
atcaaaataacagaggccattcagtatgtggtggagttcgccaagcgcatcgatggcttc
atggagctgtgtcagaacgatcagatagtgctgctcaaagcaggctctttggaagttgtg
tttgtcagaatgtgtcgtgcctttgactcgcaaaacaacacggtgtattttgacggaaag
tacgccgggccagatgtgttcaagtcattaggctgtgacgacttgatcagctccgtcttc
gagtttgggaaaaacttgtgttcgatgcacctgtctgaggatgagatcgccctgttctcc
gcctttgtgttgatgtctgctgaccgatcctggctccaggaaaaggtgaaggtggagaaa
ctccagcagaagatccagttggctctccagcacgtcctgcagaagaaccacagagaggat
ggaattcttacaaagttgatatgcaaagtgtcgacactgcgggcgctgtgcagtaggcat
acagagaagctcacggctttcaaagcaatatacccagacattgtgcgtgcccacttcccc
cctttatataaggagctgtttggatcagactttgagcagtccatgcccgttgacgggtag
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