Syngnathus scovelli (Gulf pipefish): 125971205
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Entry
125971205 CDS
T08785
Symbol
fanci
Name
(RefSeq) Fanconi anemia group I protein isoform X1
KO
K10895
fanconi anemia group I protein
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
125971205 (fanci)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sscv03400
]
125971205 (fanci)
DNA repair and recombination proteins [BR:
sscv03400
]
Eukaryotic type
DSBR (double strand breaks repair)
FA (Fanconi anemia) pathway
FANCD2-I complex
125971205 (fanci)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FANCI_S4
FANCI_HD2
FANCI_S1
FANCI_S3
FANCI_S2
FANCI_HD1
FANCI_S1-cap
Cwf_Cwc_15
Motif
Other DBs
NCBI-GeneID:
125971205
NCBI-ProteinID:
XP_049580205
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Position
6:complement(12935519..12946050)
Genome browser
AA seq
1333 aa
AA seq
DB search
MKTDVDRIISLSNADSSGELQKYLSTLTEGKLTALISNCALKGNIGTIIKAIFKGSPPGS
TDGSKRRLLLYQHCIPLCESGDLQSEVAADLIGLLMLETHTLVGPCLAQLANLFVEEIKA
GKIGNGKSLELFPTVLTALTACETLSYGKGELSGEQYKKQLINSLCSSRWDPQCVIHLTT
MFRDVPLSSDELQFVVQKTLRMFSKLDLQEIPPLVYQLLLLSAKGCKKQVLEGIVSYFKQ
QDLHHQKEQKHGENLDLEVQSIPQDQLRHVEGTVILHIVFAMRLDHELGREFLKSIKASF
GDFCPFGMAVLLSVTRIQLYEEKVFTLFKGAIIKSFKDEQLLQGSKFLQDLVPGHLSVAE
MILDTVNSSVFGWDHVTQGLVQLGFFLMDTFGPKPGPFGKPNEGSSTVARTPTQLACKLG
GQVLLQGFKMHEAIRGEILEQVLNRLVAKTASPVNHFLDLFSDIATSAPMILLESSSKVT
ETFDHLSYLPLPTVQGLLKAIQPLLKVSMSMKDTLILVLRKAMFSSQLDGRKSAVTGFLL
LLKNFKVLGSLASSQCSQTISSSQIQVDVHSRYNAAANEAFCLEILSSLRRCLGQQADVR
LMLYEGFYDVLRRNSQLASSVMQTLFSQLRKYYEPEQDLLPPVKLQPCITANADQIHLQE
PLAHLVGCTVQCLLWLANMKRSAKISSDDSDDDDDDDDEDEGYQSELQTILDSITKRMIK
SEMEDFELDKSAEFSTASSVGVKNNIYAGLVIGLYEVLLEYNFVKGNYSKNAFEELLELF
NRYNKLCEILREKSGKSRQLSNKTPRSLLSVRFISTLVTALFRDSSPSREEALNVLRSSG
EFVRYALCVAVQKIQQLEDSGVTDGPDGQSSNLMFRFLCEIISVLMWRYTNVPSAAEDAG
KKEKRSSLSQLSLEGLLGIFTTCQQRYPDKMSKLLSFIDNSEDIAESEDCEQMTYSYYIR
QFQRALFAQLSGGEEEFNSKEAQLLVNILSVLSLQLKPSSQQFAQMITWTVKICKETSVE
DSALSKGLLSLLFSLHVLFKSPTSLLLELCQDIHSHLGDIDEDVEVEKQSHFAIVSVKTA
TTAAMLVLPLVDKVLDEVDWLIGKRKSQLATDKSDPEAATQSAGHQDPVEKAVTLQLGTL
LTALNELVQTALQLGTCTITLLRALSRTYTILTTLVKYYIQFCASQSARLPSRFEKLVKL
SGSHLTPQCYCFITYVQGGDSSVGGADKKKKKNEVNTAATARLLRQTKAIPNLIFSIEEY
EKYMITLSKKSKVNLMQYMKLSTSRDFRINAATLDAALQEQDDTVEVSVISTQRGVNLSR
PAFSICIRLCSLG
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
atgaagacagacgtggacagaattatttccttatccaatgctgacagttctggagaactt
cagaaatatttgtccactctcactgaaggcaagttgactgcgctcatttccaattgtgca
ctaaagggaaatataggcacaattattaaagccattttcaaaggctcaccacctggatct
actgatgggtcaaaacgaagactcctgctttatcaacattgcatccctctctgtgagtct
ggtgacctccaaagtgaagtggcagcagatctcattggactgctcatgctggagacgcac
actctggttggaccctgtcttgcacaactagcaaatctatttgttgaagaaatcaaggca
ggaaaaataggcaatggcaaatccttggagctatttcctactgtacttactgccttgaca
gcttgtgaaacattgtcgtacggcaaaggtgagctcagtggtgagcaatacaagaaacaa
ctaatcaacagcctttgctctagcagatgggacccacaatgtgttatccacctaactaca
atgttcagagatgtgcccctgtcatcggatgaattgcagtttgtggtgcaaaaaacgctg
cggatgttcagcaagctcgacctgcaggagattccgccacttgtttatcagttgctcttg
ctatctgcaaagggttgcaagaaacaggtcctcgagggaattgtcagttattttaagcag
caagaccttcaccaccaaaaggagcagaaacacggagagaacttggatttagaagttcaa
tctattccacaggaccaattaagacatgtggagggcactgttattctccacattgttttt
gctatgaggctcgaccacgaacttgggagagaattcctgaaaagcatcaaggcttccttt
ggggacttttgccctttcggcatggctgtattgctctctgttacacgaatacagctctat
gaggaaaaggtgtttacacttttcaagggggcaatcatcaagagcttcaaagatgagcag
ctactgcaggggtcaaagttcttgcaggaccttgtgcctggtcacttaagtgtcgctgag
atgattttggacacggtgaatagcagtgtctttggatgggatcatgtgacccagggcctg
gtgcagctgggcttctttctaatggatacgtttggacctaaacccggaccatttggaaag
cccaatgaaggttcttctactgtggcccggactcccactcagctggcatgtaaacttgga
ggtcaagtactcctccagggctttaagatgcatgaggcaatcagaggcgagatcctggag
caagttctgaatcgactggtcgcaaagactgcctcacctgtcaatcattttttagacctt
ttctcagacattgcaacctctgctccaatgatattgctggagtcatcctccaaagttacc
gagacatttgaccatctgtcatatctccccctgcccactgtacagggcttgctaaaagct
atccagcctctgctgaaagtcagcatgtccatgaaagacacattgattctggtgctccgc
aaggccatgttttcaagtcagttggatggacgaaagtccgctgttactggcttcctgttg
ctgctcaagaacttcaaagtgcttggcagcctggcctccagtcagtgcagccagacaatc
tcctccagccagatccaagtggatgttcattctcgatataacgctgctgccaatgaggcc
ttctgtctggaaatcttgagcagcttgcgccgttgccttggccagcaggctgacgtgcgc
cttatgctctatgagggcttctatgatgttcttcgtcggaactcccaacttgcaagttcc
gtcatgcagacgctgttttcacagttgaggaagtactacgaacctgaacaagatcttttg
cccccggtgaaattgcagccttgcatcacagctaacgcagatcagatccaccttcaggag
cctctggcccacctggtaggctgtaccgtgcagtgtttgttgtggcttgcaaatatgaag
cgatcagccaaaatcagctccgacgacagtgatgatgatgatgatgatgacgacgaggat
gaggggtaccagtccgagctacagacgatcctagacagcatcacaaaacgcatgatcaaa
agtgaaatggaggactttgaattggacaagtcagcagaattctccaccgcatccagtgtt
ggtgtgaagaataatatctacgctgggctcgtaataggactctatgaggtcctcttggag
tacaactttgtcaaagggaattacagtaaaaatgcctttgaggagctgttggagctgttt
aaccgctacaacaagctgtgtgagatcctgagggagaaatccgggaaaagtcgacagctg
tcaaacaagactcctcgaagtttgctctcggtgcgtttcatatcgactctggtcactgcg
ctctttagagacagctctccgagcagggaagaggctctcaacgtgctgcgctccagtgga
gaatttgtacgttatgcactttgcgtggctgtgcagaagatccagcagttagaagatagt
ggagttactgacggcccagatggccaaagttcaaacttgatgttccgcttcctgtgtgaa
ataataagcgtgctgatgtggcggtataccaacgttcccagcgcagcggaagatgctggg
aaaaaagaaaaacgatccagcctgtcacaattgagcctggaaggccttctcgggatattc
actacctgccagcagcgctaccctgataagatgtccaaactgctctcattcattgacaac
tcggaggacattgctgagtcagaagattgcgaacagatgacgtactcttactacattcgt
caatttcagagagcgctgttcgcccagttgagtggaggagaggaggaatttaacagcaaa
gaagctcagctattggtcaacattttgagcgtgctttcactccagctaaagccctcctct
cagcagtttgctcagatgatcacatggacagtgaaaatctgcaaggagaccagcgttgag
gactctgctttgtcaaaggggctgctttcacttctcttcagcctgcatgttctttttaag
agccctaccagcttgttgctcgaactctgtcaggacatccatagccacctcggagatatt
gacgaggatgttgaggtagaaaagcagtctcactttgctattgtgagcgtgaaaacggca
acaacagcagcaatgctggtcctgcctctagtggacaaggtgctagatgaagtggactgg
ctaattggcaaaaggaaaagccagttggctactgacaaatcagatccagaagcggccacg
caatctgcaggccaccaggatccggttgagaaagcagtgacactgcagcttggaaccctt
ctgacggcattaaacgagttggtccagaccgcattgcagcttggaacctgcaccatcaca
ttgctccgagcattgagtcgcacttataccatcctcaccacgctggttaaatattacatt
caattttgtgccagtcagagtgctagattaccttcacgctttgaaaagctggtcaaactg
tctggatctcatctgactccacaatgctactgtttcatcacatatgttcaggggggagat
tcaagtgttggaggtgcagacaaaaagaaaaagaagaacgaagtgaacactgctgccact
gcaagacttctgcgtcagaccaaggccataccaaacttgatcttcagcatagaagagtat
gagaaatacatgatcacactctcaaagaagtcaaaggtaaatctgatgcaatacatgaaa
ctgagcacctcgagagatttccgcatcaatgctgccactctggatgcagccctacaagaa
caagacgacactgtggaagtaagcgtcatctccacacaaaggggggtaaatctgtcccgg
cctgctttcagcatttgtatccgtttgtgttccttagggtga
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