Syngnathus scovelli (Gulf pipefish): 125971220
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Entry
125971220 CDS
T08785
Symbol
acin1b
Name
(RefSeq) apoptotic chromatin condensation inducer 1b isoform X1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03013
Nucleocytoplasmic transport
sscv03015
mRNA surveillance pathway
sscv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125971220 (acin1b)
09122 Translation
03013 Nucleocytoplasmic transport
125971220 (acin1b)
03015 mRNA surveillance pathway
125971220 (acin1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125971220 (acin1b)
03041 Spliceosome [BR:
sscv03041
]
125971220 (acin1b)
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
125971220 (acin1b)
Spliceosome [BR:
sscv03041
]
Complex C
Other components
EJC/TREX
125971220 (acin1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_ACIN1
RSB_motif
SAP
RRM_1
Motif
Other DBs
NCBI-GeneID:
125971220
NCBI-ProteinID:
XP_049580273
LinkDB
All DBs
Position
1:complement(29540245..29552662)
Genome browser
AA seq
1074 aa
AA seq
DB search
MADEDITLDGQPLQSLRVADLKAALEQRNLSKSGAKNKLIQRLKGALMLENLRGRRPNSQ
MGEEMSQNSFIQQYLAKQQELLSHRQERGAHLEGEADESPAMPEEDEEQSDNDSSSCVSD
KKPPLASRSVEGELSHKPDGSTGRQEAPAARMQRATFPQGRKEPPAPSPPRAVASLSVRV
LGQPDRQGLPPALSRAQEKEGVAPSETASAHSVLHLSRSAGVSAGARVREDSDEDDDNDD
SGDDEDWGPGLGAARKGDRAPPQPPQMPASSVRSKRKLQPPQHIPPPQPQQNLMQLRHPT
PPPSPPPDLFPLPDTPKQSPPDTDDKEGECSGARRGVPPRDAQRRDSDSRSRSSSPEPPA
KRGPGPLSLLVHKMETEEAQTSAAAGQSPEESKTKEKETSDRKEDAKAPDEEKLDAKKKA
AAGDSRGAGGRDSGSSSDSDSRSDSSSKSSSSSSIRIQSCRVRQPKRAELRQDADKETKG
TATQKGHLLKRVVSEPSEAAVSEVEPRSSGEARQPAPNAEPVDGEGRLEESTTPKAFAAR
KISLTSNKTPPVDTDGGAGDADAGAAGRKRRWGSSTAVTAKKPSISITTDSLKSLIPDIK
IAQEAVVDLHPEELQLSGDDDDNNNNRDNGQGDADDGLQIRRTVTQVVPSDQENGRGDKE
ENAETAEPEIPPAATLVEQSEQAPPEKTAEKLDGELKKACPDDALVRRSISRQRSGVSVT
IDDPIRSARRPSPPRGKLSNIIHVTNLVRPFTLGQLKELLKQTGNVVEEGFWIDKIKSHC
FVTYTSAEEAAATRESLHGVKWPQSNPKVLSVDFCEQDELDFHKGLLKPKPAEPQVPQPV
PPPSRPPPLMPERDRERDRQREHEHERGAPGVRDLWAERQRQMERRERARGEREWDRDKI
REFARPGADKMERRSRSRDRERRRRERPKSKEKKTDKKEKADEPPAKLLDDLFLKTKAAP
CIYWLPLTEQQAAQRLVERSERQKERERRLKELQDEQEKVREERKKERLKARENESRGSD
GNAAASGRGAEAERDKERGRNKDGERRREGERRSGRPPLGRRSRSCSDTRDRRH
NT seq
3225 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgaggacattacgcttgacggacagcctttacaatccctccgagtggcggat
ttgaaagccgcgttggagcagagaaacctgtccaagagcggggcgaagaacaaactcatt
cagcgactgaaaggggcgctgatgctggaaaacctgcgcggacgccggcccaactctcag
atgggggaggagatgagccagaatagcttcatccaacagtatctggccaagcagcaggaa
ctcctcagtcatagacaggagagaggagcccatcttgagggggaggccgacgagagccca
gcaatgccagaagaggatgaagagcagtcggacaacgacagctcgtcctgcgtctctgac
aagaagccccctttggcatctcggagtgtcgaaggggaattgtcacataagccggacggt
agcaccggtcgccaggaggctcccgcggccaggatgcagagggccaccttcccgcaagga
cgcaaggagccaccggccccttctccccctcgcgccgtggcctcgctgtcggtgcgcgtc
ctaggccagccggaccgccagggactgcccccggccctgtccagagcccaagagaaagag
ggcgtcgcgccgagcgaaaccgcgtcggcccactcggtcctccacctcagccgatcggcc
ggcgtctcggccggagctcgggtccgggaggacagtgacgaagacgacgacaatgacgac
agcggggatgacgaggattgggggccggggctcggtgcggcacggaaaggcgaccgggcc
cccccgcagcctccgcagatgcccgccagttctgtgaggtccaaacgtaagcttcaacct
ccgcagcacatcccgccaccgcagccgcagcagaatctgatgcaactgcgccacccgacg
cccccgccctcgccgccccctgacctcttccccctcccggacactcccaagcagagcccg
ccggacaccgacgacaaggagggagaatgctccggagcgcgccgcggtgtcccacctcgt
gacgcgcagaggcgagactctgattccagatcccgctccagtagtccagagccccccgcc
aagcgcggaccgggtccgctctctctgctggtgcacaagatggagacggaggaggcgcag
accagcgccgccgccggccagtctccagaggagagtaaaacgaaagaaaaggagaccagc
gaccgaaaggaagacgcaaaagcgccagatgaggagaagctcgacgccaaaaagaaggcg
gcagctggcgatagccgcggggccggggggcgggactcgggttcctcgtcagattcggac
tcgcggtccgactcctcctctaaatcatcatcctcatcctccatcaggattcagtcgtgc
cgcgtgaggcagccgaagagagccgagctccgccaagatgcagataaggagacaaaaggg
acggcgacgcagaaaggacacctcctgaaaagagtggtgtcagagcccagcgaggcggcc
gtgtcggaggtggagccccgctcgagcggcgaggcgaggcagccggcgccaaacgccgag
ccagtcgatggcgagggccgcctggaggagagcaccactccaaaggcttttgccgctcgc
aagatctccctgaccagcaacaagacgccacccgtcgacaccgacggaggagcgggagat
gccgacgctggagcggccgggaggaagcggcgttggggctccagcacggccgtcactgcc
aagaagccgtccatcagcatcactactgactcgctcaagtctttaattccagatatcaaa
atagcccaagaagcggtggtggaccttcaccccgaggagctgcagctgtccggggatgac
gacgacaacaacaacaacagggacaatggccagggagacgccgatgacggtcttcagatc
cgacgcaccgtcacacaggtggtcccctccgaccaggagaacgggcgaggcgacaaagag
gagaacgccgagacggcggagccagaaatcccgccggcggcgaccctcgtagagcagtcc
gagcaagctcctcccgagaagacggcagagaagcttgacggagagctgaagaaagcttgc
cccgacgacgctttggtacgtcgctccatcagtcggcagcgctccggcgtgtccgtcacc
atcgacgaccccatccgatccgcgcggcggccgtcgccgccccgcggcaaactttcaaat
atcatccacgtgaccaacctggtgcggccgttcaccttgggccagctcaaagagctgctg
aaacagacgggcaacgtggtagaggagggcttctggatcgacaagatcaagtcgcactgc
ttcgtcacgtacaccagcgcagaggaagcggcggccacgagagaatctcttcacggggtc
aaatggcctcagagcaaccccaaagtgctcagcgtggacttctgtgagcaggatgagctt
gactttcacaaaggtttgttgaagccgaagcccgccgagccgcaagtcccccagccggtc
ccgccgcccagccgccctccgccgctcatgcccgagcgcgaccgagagcgcgacaggcag
cgcgagcatgagcacgagcgcggcgcgccgggcgttcgtgacttgtgggccgagcggcag
cggcaaatggagcgccgcgagcgggcccgcggcgagcgcgagtgggaccgcgacaagatc
cgcgagttcgccaggccgggagccgacaagatggagcggcgctccaggtcccgggaccgg
gagcggcggagacgggaaaggccaaagagcaaggagaagaagacagacaagaaagagaag
gcagacgagcctcccgcaaagcttctcgacgacttgttcctcaagaccaaagcggctcct
tgtatatactggctccccctcaccgaacaacaggcggcgcagaggctggtagagcgcagc
gagcggcaaaaggagcgagagcggcggctcaaggagctgcaagacgagcaggaaaaagtt
cgtgaggaacgcaagaaggagaggctgaaggcccgggaaaacgaaagccgaggcagcgac
ggcaacgccgccgcgtccggcaggggagctgaggccgagcgggacaaggagagaggccgg
aacaaagatggcgaacggaggcgggaaggcgagaggcggagtggcaggccgccgcttggc
cgccgctctcgtagctgtagcgacacccgagacaggcgccactga
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