Syngnathus scovelli (Gulf pipefish): 125971224
Help
Entry
125971224 CDS
T08785
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125971224 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125971224 (edc4)
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125971224 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
125971224 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_Prp19
WDR55
Motif
Other DBs
NCBI-GeneID:
125971224
NCBI-ProteinID:
XP_049580237
LinkDB
All DBs
Position
6:13578367..13599127
Genome browser
AA seq
1379 aa
AA seq
DB search
MAFSASIDVEGATQHLRDILKLDRPGNNTDTEASDGQRRLSFNGELNGLLGTAGLLGGGD
LTSDSTRPISAVNSIAQDIQIIRLSGDDQSTCIPIISDSVEIVASQESSINSKARGSNMV
KIQPVAKYDWEHKYHYGRLIAVSNSFMAYAIRGANNQAMIRVLSVGSAERCLLKGFTGAV
TDLAFAHLDSPLLGCVDEAGNLMVWELTCTSSTILDQIVVHIQRPQDTPLNLHRRLIWCP
FIPDENDDNQDDTSQTLALLHEDRAEVWDLEILRANNASWPVNITDLKEGLITVDGYNQR
VSEGALSPDGTVLATASHDGYIKFWQIYIEGGQDKPRCLHELRPHGGRPLSCLLFCDNHK
RQDPDVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDPLNMTILPSLKASLDLSAE
YLVLSDVQRKVLYVMELRQDLGKGKASFTAVSEFLLTHPVLSFGVQDVAQSRLRHTEVLP
AEEESESTTTEGTQGPTESKSGIQIKLFCVHTKSLQDVQIWFQPNVGSNATSLPLSNPPD
GFGFSAHLTDQNSDKDSGSGSQTDLRNISSLPAPTDFLSNATNGNEQMPKLMTPDAFMTL
NTSVPTSPGSSASSLTIVTAISDSTNRTSDDISQSPNRADNSLSLPVSSSSPRPASTAST
VLRGLEGIQTLASPSAPIALDSPQVLDSPLMAPLASPTRARSPDVISSASTVMSQDIPEI
ASQTLQLQRGLVSTSLPRSALQTDSMASAASALQLLTSPRSANNSLLPLELGCVDGPVGG
SLELEPRLSQTPSLLETALSQDNPGLAGGSTENSISHTSWPAAPDITRETRNRENSLGDC
SRDDSNDRLLSSPYACRSYCLSQNDTQDPGAEQSDHEDEVAGSASSSANCTTRSSHRIPV
KDWKTSPRSSPKLKKKTKKDESDSPQLRQLDSSQMNTDVQQELVMFLRGQQRELTELRGQ
IEAMQSSISARVERALTSHQEQEQCRLERVLAETRTQQHHQEQLSQQLSHTLCNSLTTRM
DKVLREEMKKTVPPTISKSLEPVTSHLSNTVSSKLTSVEVTLKDNVIKVVKSKNTTDAIG
RAAAEAMQGPIQAAYKDAFQSIVLPVFERGCQTMFQQINESFKQGTHEYLQQLEVHAKNK
KQREQETRDPTIDQLQRMIDTFQSSTDQLANSVTANIRAEIQHQIQMMVGNLQESILSHV
QRIIKGEVSLAMKEQQAVVTSSIVQAMRSAAGTPVPTAHLDYQTQQANILQLLQQGQLNQ
AFQQALSATDLNLVLYVCETIDSQQVFGQQPCPLSQPVLLSLIQQLSSNLNTRSELKISY
LEDALMNLDHGDPRTRDHMASVLTQVRPKLFAFIQQDPHNPLTKRARRLMMMLQGLVNH
NT seq
4140 nt
NT seq
+upstream
nt +downstream
nt
atggcgttcagcgctagtatcgacgttgaaggtgcaacacagcatctccgggatatcctg
aagctcgaccgtcctggtaacaatactgatacagaagcaagtgatggtcaaagacggttg
tcctttaatggagaactcaacgggctattgggaacagcaggtcttctcggaggtggtgat
ttgacatcggactcgaccagacctatttccgcagtcaacagcattgctcaggatatccag
ataattcgcctttctggagatgatcagtctacctgcatccccatcatctcggacagtgtg
gagattgtggcgagtcaggaatcgagcattaacagcaaggctcgaggtagtaacatggtg
aagattcagcctgttgccaagtacgactgggagcacaagtatcattatggcagacttatt
gctgtgtcaaattccttcatggcatatgcaattagaggagccaacaaccaggctatgata
cgcgttttgagtgtgggctctgcagaacgatgcttactgaagggcttcactggtgccgtc
accgatctggctttcgcccaccttgactcgcctctgttgggttgtgtagatgaagctggc
aacctgatggtttgggaactcacctgcaccagcagtacaatactagatcaaatagttgtt
cacatccaaaggccacaggacactccactgaacttgcatcggcgtctcatctggtgtcct
ttcattccagatgaaaatgatgacaaccaagatgacaccagccagactttggctcttctg
catgaagatagggctgaagtgtgggaccttgaaatcttgagggccaacaatgcaagttgg
cctgttaatatcacagatttgaaagaaggcctcatcacagtggatggatataaccagcgt
gtcagtgaaggcgccctatctccagatggaacagtgttagccacagccagtcatgatgga
tacataaagttctggcagatatatatagaagggggccaggacaagccaagatgtctacat
gaattgcgtcctcatggtggacgtcccctttcctgtttactcttctgtgacaaccacaaa
aggcaggaccctgatgttccattctggaggtttcttataactggagcagatcagaaccaa
gaattaaagatgtggtgcacggtttcatggacgtgtttgcagactatcagattctctcca
gatccactgaacatgacaattctgcctagtcttaaggcaagtttggacctgtctgctgag
tatcttgtcctttctgacgtacagaggaaggttctttatgtgatggaactgagacaagat
ctgggaaaaggcaaggcatctttcactgccgtgtctgagtttctgctgacccatcctgtg
cttagctttggagttcaagatgttgcccaaagccgtttgcgacacactgaagttcttcct
gcggaggaggagagtgagagcacaacaacagagggcactcaagggcccacagagtccaaa
tctggcatccagattaaactgttctgtgttcataccaagagtttacaggatgtccagatc
tggttccagcctaatgtgggttccaacgctactagtctgcccctttctaatcctccagat
ggttttgggttttcagcccatctgacagaccagaattctgacaaggactcagggagtgga
tcccagacagacctaaggaacatctcatcacttcctgcacctactgacttcctgtcaaac
gcaaccaatggcaatgagcaaatgccaaaattgatgactcctgatgccttcatgacacta
aacacttcggtgcctacatctcctggcagtagtgccagcagtctgacaattgtgacagca
atcagcgactcaaccaatagaacttctgatgacattagtcagagccccaaccgtgcagat
aacagtttgtcacttccggtttctagtagcagtccaagacctgcttctactgcttcaact
gtcctgcgtggactggagggcattcagacactggcatcccctagtgctccaattgcgctt
gacagccctcaggttcttgattctccactcatggcaccccttgcctccccaacaagggcc
cgctcccctgatgttatctcctcagcgtctacagtcatgtcccaggacattccagagatt
gcatcccagaccctgcagctccagcgtggtcttgtgtccacttctttacctcggtctgct
cttcaaactgatagtatggcctctgctgcttctgcccttcagttgctcacttcaccacgc
tcagccaacaacagcctattgccccttgagcttggatgtgtagatgggcctgttggaggg
tctctagagttggagcccagacttagccaaacaccatctctcctggagaccgctttatct
caggataatcctgggttagcaggagggtctacagagaacagcattagccacacctcttgg
ccagctgctccagacatcaccagggaaactaggaatagagaaaatagtcttggagactgc
tcaagggatgattcaaacgacagactcctgagttcaccctatgcatgtcggtcctattgc
ctctcacagaacgacactcaggatcctggtgctgagcagagtgaccatgaggatgaagtt
gctggttcagcatcatcttctgcaaattgtaccacacgttcctctcacagaatacctgtt
aaagactggaaaacctcacccagaagctcaccaaagctgaagaaaaagaccaaaaaagat
gagagtgactcacctcagttgagacaattggactctagtcagatgaatacagatgtgcag
caagagttagtaatgtttctccgaggacaacaaagagagttaactgaactacgtggacaa
attgaagccatgcagagctccatcagtgcacgagtagaacgtgcgctgaccagccatcag
gaacaagaacagtgcagactcgagcgtgttctcgcagagactcggactcagcaacaccat
caggaacaactcagccagcagctgagccacaccctttgcaattccctaacaaccagaatg
gacaaagtgcttcgagaggagatgaagaaaactgttcctccaacaatttcaaagagtctg
gagccagtgacatctcatctaagcaacaccgtttcttctaaactgacctcggtagaggtt
accctgaaggacaatgttatcaaggtggtcaaatccaagaacacaacagatgcaattggc
cgagccgcagcagaggcaatgcagggtcctatccaggctgcctacaaagatgccttccag
agcattgtgctgcctgtttttgagagaggctgccagaccatgtttcagcaaattaatgaa
agtttcaagcaaggaacacatgaatacttacagcagctcgaggtccatgcaaagaacaaa
aagcagagagagcaggaaacacgagaccccacgattgaccaactgcaacgtatgatagac
accttccaaagttccaccgatcaactggccaatagcgtgacagctaacatccgggctgag
atccaacatcagatccagatgatggtgggaaatttgcaggagtcaattcttagtcatgtc
cagcgtattatcaaaggggaggtgagcctggcaatgaaggagcagcaggcagtggtcacc
tccagcatagtgcaagcaatgaggtctgcagcagggaccccagtccctactgcacatcta
gactaccagacgcagcaagctaacatcctacagcttcttcagcagggacaactcaaccag
gctttccagcaggctctctcagcaacagatctgaacttggtcttgtacgtgtgcgagacc
atcgactcccagcaggtgtttggacaacagccgtgccctcttagccagcctgtgctgctg
tcactcatacagcagctctcatccaacctcaacactcgctcagagctcaaaatcagctac
ttggaagacgcattgatgaacctggaccacggtgatcctcgaacacgagatcacatggcc
tccgtgctgacccaagtcagaccaaagctcttcgcattcatccagcaggacccccacaac
cctcttaccaagagagcgcgacgcctcatgatgatgctccaaggacttgtcaaccactag
DBGET
integrated database retrieval system
