Syngnathus scovelli (Gulf pipefish): 125971317
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Entry
125971317 CDS
T08785
Symbol
rxrgb
Name
(RefSeq) retinoic acid receptor RXR-gamma-B isoform X1
KO
K08526
retinoid X receptor gamma
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03320
PPAR signaling pathway
sscv04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
125971317 (rxrgb)
03320 PPAR signaling pathway
125971317 (rxrgb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sscv03000
]
125971317 (rxrgb)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
sscv03310
]
125971317 (rxrgb)
Transcription factors [BR:
sscv03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
125971317 (rxrgb)
Nuclear receptors [BR:
sscv03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
125971317 (rxrgb)
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Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
Nuc_recep-AF1
zf-C4
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
125971317
NCBI-ProteinID:
XP_049580404
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Position
10:4039874..4056501
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AA seq
460 aa
AA seq
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MWQPAASPAAGCGAGRELGYGHYSTGPMSTAHSHPHGAPMGGMVGHPSVISTARHLPSPM
SSMGSHMNGLASPYSVITSSLPSTPNLNFGPLGSPQMNSMNSVSSSEDIKPPPGLQNLGS
INYQCPSPGGMSKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDSKECLI
DKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKERGENEVESTSSFNEEMPVDKILDAE
LAVEPKTETYSDGSPGNSTNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLR
AGWNELLIASFSHRSVTVKDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQM
DKTELGCLRAIVLFNPDAKGLSNPTEVEALREKVYASLESYTKHKYPDQPGRFAKLLLRL
PALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQIT
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgtggcaacctgcggcatcacctgcagctggatgtggcgccgggcgggagctgggttac
ggccactattctaccgggccaatgagcacggcccattcccacccccacggtgcgccaatg
ggcggcatggtgggccacccgtcggttatcagcaccgccaggcacctgccgtcgcccatg
tcatccatgggctcgcacatgaacggcttggcctcaccttactccgtcatcacctcatct
ctgccgtccacgcccaacttgaacttcggaccgctcggaagtccgcagatgaactctatg
aacagcgtgagcagctcggaggacatcaagcctccgccgggcctgcagaacctggggagc
atcaactaccagtgcccgagccctggggggatgtcaaagcacatctgcgccatctgcgga
gaccgttcctcagggaaacactatggcgtgtacagctgcgagggatgcaaagggttcttc
aagaggaccgtgcgcaaagatctcacttacacttgtcgggatagtaaagagtgcctgatc
gacaagcgccagcggaaccgctgtcagtattgtcgataccagaagtgcctggccatgggc
atgaagagagaagcggtacaggaagagaggcagcgtgggaaagagcgtggggagaatgag
gtggagtcgactagcagttttaatgaggagatgcctgtggacaagatcctagacgctgag
ctggcggtggagcccaagacggagacgtactcggacggcagccccggcaactcgaccaac
gaccccgtcaccaacatctgccaagcggcagacaagcagctcttcacgttagtggagtgg
gccaagaggattccccacttctcagagctccccttagatgaccaggtcatcctattacga
gcaggctggaacgagctgctcatcgcgtccttctctcatcggtcggtgacggtgaaagat
ggaatcttactggccacgggcctccacgtccatagaagcagtgcccacagcgctggggtg
ggctccatctttgacagagtcctgacagagctggtgtccaaaatgaaggatatgcagatg
gataaaacggagctaggctgcttgcgagccattgtcctgttcaacccagatgcaaaaggt
ttgtccaacccaacggaggtggaggcattgagggaaaaagtatacgcctctctggagtct
tacactaaacacaaatacccggaccagcctggaaggtttgccaagttgctgctgcgtctg
cccgcgttgcgctccatcggcctcaagtgcttggagcaccttttcttcttcaaactcatc
ggagacacgcccatcgacaccttcctcatggagatgctggaagcgccgcatcagatcaca
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