Syngnathus scovelli (Gulf pipefish): 125971765
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Entry
125971765 CDS
T08785
Symbol
dhx36
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125971765 (dhx36)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125971765 (dhx36)
03012 Translation factors [BR:
sscv03012
]
125971765 (dhx36)
Enzymes [BR:
sscv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125971765 (dhx36)
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
125971765 (dhx36)
Translation factors [BR:
sscv03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
125971765 (dhx36)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
DEAD
Helicase_C
HA2_N
AAA_22
nSTAND3
AAA_19
ATPase
NPHP3_N
NB-ARC
RbpA
AAA_16
PhoH
Motif
Other DBs
NCBI-GeneID:
125971765
NCBI-ProteinID:
XP_049580651
LinkDB
All DBs
Position
7:complement(2189240..2200032)
Genome browser
AA seq
1064 aa
AA seq
DB search
MNSKYGGRGRRGGSSRGSSRGNRDGSRERANRGGGNSGDPDQDSFSRHPSHLKGREIGLW
YARHGAVRKKQADRRSRAVVQMDETREQHIIKLLDSVQNDQPGLERPNNDARGSASGNWR
VPSSKSSHCYFDGDMSEEEKQKIKFEEEDQKRSISQAVKDEIPDAWDDNDDDAVNDDDDD
KDHAMERQQVKVDEDKEKVRRNDKDLEFLLHETSRNVALDESLKRDLECKKSHPKYKEML
TFRKKLPSYGKKEELVQLINSNQVLVVSGETGCGKTTQVTQFILDDYIRRGMGSVCRVVC
TQPRRISAISVAERVAAERAEQVGNGNSCGYQIRLQCKLPRGKGSILYCTTGIVLQWLRS
DTNLSSISHLVLDEVHERSLQSDVLLTIVKDLLDVRHDLKVILMSATLNAEKFSKYFDNC
PMIHIPGFTFPVEELLLEDIVEMMRYQPKNNDRRPAWKRGFWQGRHSRPEKKEKEDEYKE
SWPCYARTLQDKYSESTIAALETLDGDDKIDLDLIVALIRHIVLSDEEGAILVFLPGWDN
ISSLNDLLMAQQMFKSDRFVIIPLHSLMPTVNQTLVFQRPPPGVRKIVIATNIAETSITI
DDVVFVIDGGKIKETNFDTNNNISTMTAEWVSLANAKQRKGRAGRVCPGKCYHLYNGLRA
SLLDSYQLPEIMRTPLEELCLQIKILQLGGIAHFLQKALDPPSEQAVNLAIKNLQVLNAL
DHSENLTPLGFHLARLPVEPHIGKLILFGALLGCLDPVLTIAACLSFKDPFFIPLGKEAL
ADKRRKELSRNSKSDHLTVVYAFQGWQDAKRWRREQSFCWDNFLSVNTLQMLHNMKGQFA
EHLWHAGFVSSKDPKDPNSNVNSDNEKLIKAVIVAGLYPKVAMIRPRHSKKRPGVKVYTQ
HDGQVNIHPKSVNSEETNFNYKWLIYHLKMRTSSIFLYDCTEVSPFSLLFFGGDISIQKD
EDQETIAVDQWIVFRSPARIAHLVKNLKQALNSLLEEKIRRPAPVDWKNHQSKDCAVITA
IVDLITTQESSTSAESAGGGARGHDKPLAPRGQHKYFDDDDDDN
NT seq
3195 nt
NT seq
+upstream
nt +downstream
nt
atgaattctaagtacggagggcgaggcagaagaggaggcagtagtagggggagcagtaga
ggcaaccgtgatggcagcagagaaagagccaaccggggaggtggaaatagtggcgacccc
gaccaggactccttttctcgtcatccttcgcatttgaaaggccgagaaattggcttgtgg
tatgcaagacacggagccgtgaggaagaaacaggctgaccggagatcgcgagcagtggtc
cagatggatgaaaccagagagcagcacattatcaagctgctcgactccgtccagaatgac
cagccaggtttggagagaccaaataatgatgcgagaggttctgcgtcgggcaactggcgt
gtaccttccagtaaaagtagtcactgctacttcgatggggacatgagtgaagaggaaaaa
cagaagatcaaatttgaagaggaagaccagaaacgttcaatctctcaggcagttaaagat
gagattcctgacgcttgggatgataatgatgacgacgccgtcaatgatgatgacgacgat
aaggatcatgcgatggagcggcagcaagtgaaggtggatgaagacaaggagaaagtgagg
aggaatgacaaagatctcgagttcctactccatgaaacatccagaaatgttgcgctggat
gagtcgttgaaaagagatctggagtgtaagaaatcacacccgaagtataaggagatgctg
acgttcagaaaaaagttgccatcctacgggaagaaagaggagctggtccagctgattaat
tccaaccaagttctggtagtgagcggcgaaacgggctgcgggaaaaccacccaggtgacc
cagttcatcctggacgactacatcaggcgcggcatgggctccgtgtgccgtgtggtttgc
acgcagcctcgccgcatcagcgccatctcggtcgccgagcgtgtggccgctgagagggcg
gaacaggtcggcaatggaaattcatgcggttaccaaattcgcttgcagtgcaagttacct
cggggaaaaggttcaatcctgtactgcaccacgggcattgttcttcagtggcttcgctca
gacacgaatttatcaagtatcagtcacttggtcctggatgaggtccacgagcgaagcctg
caatccgacgtgttgctcaccatcgtcaaggacctactcgacgtgcgacacgacctcaag
gtcatcctgatgagtgccacgctcaacgcagagaaattctccaagtactttgacaactgc
cccatgatccacatcccgggctttacgttcccagtggaggagctcctccttgaggacatt
gtggagatgatgagatatcagcctaagaacaacgaccgccgacccgcttggaaaagaggc
ttctggcaggggcgccactccagacccgagaagaaggagaaggaggacgaatacaaagag
agctggccttgttatgctcgcacgctccaggacaaatactccgagagcacaatcgccgct
ctcgagacgctggacggcgacgacaagatcgacttggacctcatcgtggcgcttatccgc
catattgtgctcagcgacgaggaaggagccatcttggtcttcctgcctggctgggacaac
atcagcagcctcaatgatttgctgatggcgcagcagatgttcaaatcagatcgttttgtc
atcatcccgctgcactcgctcatgccgaccgttaatcagaccctggtgttccagcgtcct
ccacctggggtgcggaagattgtgattgctaccaatatagccgaaacgagcatcaccatc
gacgatgtggtttttgtgatcgacggaggcaagatcaaggaaaccaacttcgacaccaac
aacaacatcagcaccatgacggccgagtgggtgagcctggccaacgccaagcagaggaaa
ggtcgcgctggcagagtgtgccccggcaagtgctatcatctgtacaacggtctccgagcc
agccttttagattcctaccaattaccagaaatcatgaggactccgctggaggagctgtgc
ctgcagatcaagatattgcagctcgggggcatcgctcacttcctgcagaaagctctggac
ccgcccagtgaacaggccgtcaatctagccataaagaacctccaagtcctgaacgctttg
gaccattcggagaatctgacgccgctgggtttccacttggcccgcctacccgtggaacct
cacatcggaaagctcatcctgttcggagcgctgttaggctgccttgaccccgtactcacc
atcgccgcctgcctcagcttcaaagaccctttcttcatccctctgggcaaagaggcgctg
gcagacaagaggaggaaagagctgtccaggaactccaaaagcgaccaccttactgtggtc
tatgccttccagggctggcaagatgcgaaacggtggcggcgcgagcaaagcttctgctgg
gacaacttcctgtctgtcaacacgctccagatgctgcacaacatgaagggccagtttgcc
gaacatctctggcacgcgggcttcgtcagcagcaaggaccctaaagaccccaactctaac
gtcaactcggataacgagaagctgatcaaggcggtgattgtagccggcttgtatcctaaa
gtagccatgatccgaccaaggcatagtaaaaagaggcccggggtcaaagtgtacacacag
cacgacgggcaggtgaacattcaccccaagtccgtcaactccgaagagaccaacttcaat
tacaagtggctcatctatcacctcaaaatgagaaccagcagcatcttcctgtacgactgc
accgaagtgtcgcccttctctctgcttttcttcggcggcgacatcagcatccagaaggac
gaggaccaggagaccatcgccgtggaccagtggatcgtcttcaggtcgccggcacgcatt
gctcatcttgtcaagaacctaaaacaagcgcttaattctctgctggaagaaaaaatccgc
aggccggcccctgtggactggaagaaccaccaatccaaagactgcgccgtcatcacggcc
atcgtcgatctcattaccacgcaggagtcgtccacatcagcagagagcgctgggggcgga
gccagaggccatgacaagcctttggcccctagaggacaacacaagtacttcgacgacgac
gatgacgacaattag
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integrated database retrieval system
