Syngnathus scovelli (Gulf pipefish): 125971800
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Entry
125971800 CDS
T08785
Name
(RefSeq) tripartite motif-containing protein 3
KO
K11997
tripartite motif-containing protein 2/3
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sscv04121
]
125971800
Ubiquitin system [BR:
sscv04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
125971800
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NHL
DUF4934
Filamin
DUF5128
SGL
zf-B_box
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
zf-RING_5
TEN_NHL
zf-RING_2
Invasin_D3
RING_XB3-XBAT31
CRLF3_N
zf-C3HC4_4
FTR1_4HB
Prok-RING_4
Mala_s_1-like
zf-ANAPC11
SPATS2-like
Baculo_PEP_C
Histidinol_dh
OEP
RSS_P20
Fib_alpha
Motif
Other DBs
NCBI-GeneID:
125971800
NCBI-ProteinID:
XP_049580749
LinkDB
All DBs
Position
7:788012..800085
Genome browser
AA seq
773 aa
AA seq
DB search
MSVSMAKRESGGAASPVVRQIDKQFLVCSICLDRYHNPKVLPCLHTFCERCLQNYIPPQS
LTLSCPVCRQTSILPEKGVAALQNNFFITNLMEVLQRDPECSRPEACNALDSAGAAATTC
PPLSCPNHEGKVMEFYCESCETAMCLECTEGEHREHVTVPLRDVLEQHKSALKNQLDTVR
NRLPQLTVAIELVNEISKQLTERKHAAVTEINDTFDELEKALHQRKSALVAEVDNICSAK
QKVLQAQLTSLLQGKENIQSSCDFTEQALSHGSATEVLLVQKQMGERVSALARHTFPEHP
HENGHLECQVETDGLRRSIQNLGVLITTGAVGHTSVATGEGLRHALVGQHTTVTVTTKDK
DGELVRTGNAALRARIVSAEGAAAEAEVTDNKNGTYEVGYTARAEGEFAFSLLLYEQPVR
GSPFRLRAVKPSDVLQSPDDVKRRVKSPSGGGGHVRQKAVRRPSSMYSTTKKKENPIEDE
LIYRVGTRGRDKGEFTNLQGISTSSNGRIVVADSNNQCIQVFSNDGQFKMRFGVRGRSPG
QLQRPTGVTVDMNGDIIVADYDNRWISIFSSDGKFKNKIGAGRLMGPKGVAVDKNGHIIT
VDNKACCVFIFQANGKLVTKFGAKGTSDRHFAEKSGANVTLEQKLSKSGPVFSPHFVAVN
NKNEIVVTDFHNHSVKVYNADGEFLFKFGSHGEGNGQFNAPTGVAVDANGNIIVADWGNS
RIQVFDSSGSFLSYINTTADPLYGPQGLALTSDGHVAVADSGNHCFKVYRYLQ
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtgtccatggccaagcgcgagagcggcggcgccgccagcccggtggtgaggcag
atcgacaagcagttcctggtgtgcagcatctgcctggaccgctaccacaaccccaaagtg
ctgccctgcctgcacactttctgtgagagatgcctgcagaactacatccctccgcagtcc
ctgacgctgtcgtgtccggtgtgccggcagacgtccatcctgcccgaaaagggcgtggcc
gctctccagaacaactttttcatcaccaacctgatggaggtcctgcagcgggaccctgag
tgcagccgacccgaggcatgcaacgcgctggactcggccggcgccgccgccaccacctgc
ccgcccctctcctgccccaaccacgagggcaaggtgatggagttctactgcgagtcgtgt
gagacggccatgtgcctggagtgcacggagggcgagcacagggagcatgtgacggtgcct
ctgagggacgtgctcgaacaacacaagtcggcactcaagaaccagctggacaccgtacgc
aacagacttcctcagctgacggtggccatcgagctagtaaacgagatctccaagcagctg
acggagcgcaagcacgccgccgtgacggagatcaacgacactttcgacgagctggagaaa
gccttgcaccagcgcaagagcgcccttgtcgccgaggtggacaacatctgcagcgccaag
cagaaggtgctccaagcccagctgacgtcgttactgcagggcaaagagaacatccagagc
agctgcgacttcaccgagcaggccctgagccacggcagcgccaccgaggtgctcctggtc
cagaagcagatgggcgagcgggtcagcgccctggcgcgccacaccttccccgagcacccg
cacgaaaacggccacctggagtgccaagtggagacggacggcctgcggcgctccatccag
aacctgggcgtcttgatcaccacgggggcggtgggccacaccagcgtggccactggcgag
ggcctgcgccatgcgctggtgggccagcataccaccgtcaccgtcaccaccaaggacaaa
gacggcgagctggtcaggacgggcaacgccgccctgcgggcccgtatcgtgtcggccgag
ggcgcggcggctgaggccgaggtgacggacaacaagaacggcacctacgaggtgggctac
acggcccgtgccgaaggcgagttcgccttctcgctgctgctctacgagcagcccgtccgg
gggagccccttccgcctgcgcgccgtcaagccctccgacgtgctgcagtcgcccgatgac
gtcaagcggcgggtcaagtcgccgagcggcggaggaggtcacgtgcgccagaaggccgtc
agaaggccctccagtatgtacagcaccaccaagaagaaggagaaccccattgaggacgag
ctcatctacagagtcggaacaagaggacgtgacaaaggagaattcaccaaccttcaaggc
atctccacctccagcaacggtcgcatcgtggtggccgacagcaacaaccaatgcatacag
gtgttctccaacgacgggcagttcaagatgcggttcggggtcagaggtcgctccccgggg
cagctgcagcgcccgacgggggtgacggtggacatgaacggcgacatcatcgtggccgac
tacgacaacagatggattagcatcttctcctccgacggaaaattcaaaaacaaaatcggt
gccggtcgtctgatgggtcccaaaggagtggccgtggacaagaacggacacatcatcact
gtggacaacaaggcctgctgcgtcttcatcttccaggccaacggaaagctggtcaccaaa
tttggagccaagggaacgtccgacagacactttgctgaaaaaagtggagcaaatgtgaca
ctcgaacaaaagctgagtaaatcaggcccagtcttcagtcctcattttgtggcagtcaat
aacaagaatgagattgttgtgacggactttcacaaccattccgtgaaggtctacaatgcg
gacggcgagttcctgttcaagtttggctcgcacggtgaaggcaacggccagttcaacgct
cccacgggcgtggccgtcgacgccaacggcaacatcatcgtggccgactggggcaacagt
cgcatccaggtttttgacagctcaggctccttcttgtcctacatcaacacgacggcggac
cccttgtacggcccgcaaggcttggcgctcacctcggacggccacgtggcggtggctgac
tcgggcaaccactgcttcaaggtttaccgctacctgcagtaa
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