Syngnathus scovelli (Gulf pipefish): 125971830
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Entry
125971830 CDS
T08785
Symbol
hnf1ba
Name
(RefSeq) hepatocyte nuclear factor 1-beta-A isoform X1
KO
K08034
transcription factor 2, hepatocyte nuclear factor 1-beta
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sscv03000
]
125971830 (hnf1ba)
Transcription factors [BR:
sscv03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
125971830 (hnf1ba)
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GFIT
Motif
Pfam:
HNF-1B_C
HNF-1_N
Homeodomain
Homeobox_KN
HTH_5
Motif
Other DBs
NCBI-GeneID:
125971830
NCBI-ProteinID:
XP_049580820
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Position
7:3531736..3553299
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AA seq
571 aa
AA seq
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MFSNMVSKLTSLQHELLSALLDSGLTREVLIQALDDMDPNPAGGFGVKLERLQSPLSPRH
KNNTNGESCDAKPVFHTLTNGIGKAATKLSGDEGSEDGDDFDTPPILKELQSLNTEEAAE
QRAEVDRMLAEDPWRAARMIKGYMQQHNIPQREVVDITGLNQSHLSQHLNKGTPMKTQKR
AALYTWYVRKQREILRQFNQAVQGSGSNMTDKGNQDPVFFFPEFNPSGQGMGQPGGGDDT
GGEPSSKKMRRNRFKWGPASQQILYQAYERQKNPSKEEREALVEECNRAECLQRGVSPSK
AQGLGSNLVTEVRVYNWFANRRKEEAFRQKLAMDAYSTPTTHSINPLLSHGSPHHPQTSA
SPPMRYSQGPGEVTSSTSISHHLSSGLATSQSVLQQVSPGVLDPSHSLLSPDAKMISGSG
GGLPPVSTLTNIHSSHHSHQQTQNLIMPLSGVMAIAQSLNTSQSQSVPVINSVAGSLAAL
QPVQFSQQLHSPHQQSLMQHSPNHMSQQPFMAAVTHSHMYSHKQEPPQYSHPSRFPSAMV
VTDANSISKTDAPVNKMVQLGGLSWCPLQAW
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgttctccaacatggtgtccaagctgacgtccctgcagcacgagctcctgagcgcactg
ctggattcagggctcaccagggaggtcctgatccaggcgctggacgacatggaccctaac
ccggccgggggcttcggggtgaagttggaaaggctgcaatcaccgctgtctccgcgccac
aaaaacaacacaaacggcgagtcatgcgacgccaagccggtgttccacacactgactaac
ggcatcgggaaagcggccaccaaactgtccggcgacgagggctcggaggacggcgacgac
ttcgacacgccgcccatcctcaaggagctgcagtccctcaacaccgaggaggccgccgag
cagcgcgccgaggtcgaccgcatgttggcggaggatccatggcgcgcagcccgtatgatc
aaaggttacatgcagcagcacaacattccacaacgcgaagtggtggacatcacaggcctc
aatcagtcgcacctctcacagcacctgaacaagggcacgcccatgaagacccagaagcgc
gccgccctctacacttggtacgtgcgcaagcagcgggagatcctcagacagttcaaccag
gctgtgcaaggttctggcagcaatatgacagacaaaggcaatcaggatccggtgtttttt
ttcccagagttcaacccgtccggtcagggcatgggtcagcccggcggcggcgatgacacc
ggcggcgaaccctcctccaagaaaatgagacgtaatcgtttcaaatgggggcccgcctcg
caacagatcctctaccaagcctacgagaggcaaaagaaccccagcaaggaggagagggag
gcgctggtagaggagtgcaacagagctgagtgcctccagaggggggtgtcgccatccaaa
gctcaaggtctgggctccaacctggtgacggaggtgcgggtgtacaactggttcgccaat
cgacgcaaggaagaagcgttcaggcagaagctggccatggacgcctacagcacgccgacc
acgcacagcatcaacccgctgctgtcccatggctcaccgcaccacccgcagaccagcgca
tcacctccaatgcgctacagccaaggccctggcgaggtgacgtcgtccactagcattagc
caccaccttagcagcggcctggccaccagccagtcggtgctccagcaggtatcgccgggc
gtactggaccccagccacagtctgctgtcacccgacgccaagatgatttcgggttcaggc
ggcggcctccctccagtgagcacgctgaccaacatccacagttcccatcacagccatcag
cagacgcaaaacctcatcatgccgctttctggagtcatggccatcgcgcaaagtttgaac
acgtcgcagtctcagtcggtgccggtgatcaacagcgtggcaggcagcctggcggccctt
cagcccgttcagttctcgcagcagcttcacagtcctcaccagcagagcctcatgcagcat
tcgcccaatcacatgagccagcagccgttcatggccgccgtcacgcactcgcacatgtac
tcacacaagcaggagccgccgcaatattcacacccgtcgcgtttcccgtcggccatggtg
gtgacggacgccaacagcatcagcaaaacggatgctccggtaaacaagatggtgcaactc
gggggtctttcctggtgtcctcttcaagcgtggtga
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