Syngnathus scovelli (Gulf pipefish): 125971875
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Entry
125971875 CDS
T08785
Symbol
si:ch211-11n16.2
Name
(RefSeq) zinc finger FYVE domain-containing protein 1
KO
K17603
zinc finger FYVE domain-containing protein 1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
125971875 (si:ch211-11n16.2)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sscv01009
]
125971875 (si:ch211-11n16.2)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sscv04131
]
125971875 (si:ch211-11n16.2)
03029 Mitochondrial biogenesis [BR:
sscv03029
]
125971875 (si:ch211-11n16.2)
Protein phosphatases and associated proteins [BR:
sscv01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
125971875 (si:ch211-11n16.2)
Membrane trafficking [BR:
sscv04131
]
Autophagy
Other autophagy associated proteins
Others
125971875 (si:ch211-11n16.2)
Mitochondrial biogenesis [BR:
sscv03029
]
Mitochondrial quality control factors
Mitophagy factors
Other mitophagy factors
125971875 (si:ch211-11n16.2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FYVE
FYVE_CARP1-2
GBP
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
125971875
NCBI-ProteinID:
XP_049580920
LinkDB
All DBs
Position
7:complement(5834102..5839003)
Genome browser
AA seq
660 aa
AA seq
DB search
MSEVLMTSTEETSLCPMQLDEHPDGVRSFLLVDDQENLQVRSESDFVERLNCADVGAVKV
LSIFGNTGDGKSHTLNHILFNGESVFFTSKSPSSCTVGVWAAYEPSLSLVALDTEGLLGA
GLLGSATNQNQRMRLLLKVLAVSDIVIYRTRAERLHSDMFQFLSSASGAYLKHFTPELRA
LSSRCGLDVPLSCLGPAVIVFHETIRTEPLGRDSKVAGNGDMQLQRRFHDLGLGTDAFSS
VQYVGTQTVTAPTDYSQLLEALGQQVQNTHTRSPRHPGIVFRALQALSERFCGDLPEDKL
NLHTFFPDEYFTCSAVCLSCNIRCKNGMNHLRDRVPHMADGLCQYAHQYNNKVLICKRCY
EGGREVTVVPKTSASSDNPWFGLAKFAWSGYVLECASCGVIYRSRQYWVGNQDPESNVVR
SEVKHVWEGSDTFLTNHQNAAQRVLDGMNYVIQSVSEYSTGPTKAVTAWLTDQVAPPYWR
PNMEITACHGCQKAFEEAERKHHCRSCGEGFCHLCSSHRMPVPERGWGSSPVRVCLACYR
QGGPHETNNQVCKAEPRGLIARRVAEVAQSTLDIFSTAVDYPLCIVKDVARPDYWVPDQD
ITQCHQCSKVFTPVMSKHHCRACGQGVCGPCSTHMKPVPSRGWDHPVRVCNSCAASTDGL
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaagtgctcatgacatcaacggaggaaacatcactgtgtccaatgcaactagac
gagcatcccgatggtgtacgaagcttcctgctggtcgatgaccaggaaaacctgcaggtc
cgcagtgagtccgattttgttgaacggctcaactgtgcggatgtgggtgctgtcaaagta
ctctccatctttgggaacaccggtgacggcaagtcacatacgttgaaccatatcctgttc
aatggcgagagtgtgttttttacatccaagtcccccagctcctgtacggtgggtgtttgg
gccgcttatgagccatccctcagcctggttgccctggataccgagggcttgttgggagcg
ggcttgttgggttcagctactaatcaaaaccagagaatgaggcttctgctcaaggtcctg
gcagtgtcagatatagtaatctatcggacgcgagccgagcgtctacacagcgacatgttc
cagtttctgagcagtgcgtcgggggcctacctgaaacatttcacccctgagcttcgggcc
ctgtcaagccgctgcggtttggatgtgcccctctcatgtcttggacctgctgtcattgtc
tttcacgagaccatacgcacagagcctttgggccgtgattcaaaggtggctggcaatggc
gacatgcagctccaaaggcggtttcatgatctgggcttgggtaccgatgccttcagttca
gtgcagtacgtgggcacccaaacggtcactgctccaactgactacagccaactgctggag
gctctcggacagcaagtgcaaaacactcacacacgttcgccccgccatcctggcattgtg
tttcgggctttgcaagccctcagtgaacgcttctgtggtgacctaccagaggacaagctg
aatctgcacactttcttcccagatgagtacttcacctgctctgcggtttgcctcagttgc
aatattcgctgcaagaatggaatgaaccatttgcgagacagggtccctcacatggcagat
ggactgtgccaatatgcacaccagtacaacaacaaagtccttatctgtaagaggtgttat
gaaggtggaagagaagtgacagttgtgccaaaaacctcggcctcctctgacaacccgtgg
tttggtcttgccaagtttgcctggtcgggctatgtgttggagtgtgccagctgtggcgtc
atctaccgcagcagacagtactgggtaggaaaccaggatcccgaaagcaacgtcgtgcgt
tcggaggtcaaacacgtttgggaggggtcagacactttcctcaccaaccaccaaaatgcg
gcccagagggtcctagatgggatgaactacgtgatccaatcggtgtcggaatacagcacc
ggccccactaaagctgtcaccgcttggctcactgaccaggtggcaccaccgtactggaga
cccaacatggagattacagcatgtcacggctgtcaaaaagcgtttgaggaggccgagcgc
aagcatcactgtcggtcatgcggcgagggcttctgtcacctgtgctccagccacaggatg
ccggtgccagagaggggttggggtagcagccctgtcagagtttgtttggcctgctatcgt
cagggaggaccgcacgaaaccaacaatcaggtgtgtaaagcagagccccgtggtctcatc
gctcgcagggtggcggaggtggctcagtccactttagacatcttcagcactgcagtagac
tacccactctgcattgtgaaggatgtggctcgaccagactactgggtcccggatcaggac
atcacacaatgccaccagtgctcaaaggtcttcactccagtcatgtccaagcaccactgc
agagcctgtggtcagggggtgtgcggcccctgctccacacacatgaaacccgtaccgtca
agagggtgggaccacccggtgagagtatgcaacagctgtgccgcttccaccgatggtctc
tga
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