Syngnathus scovelli (Gulf pipefish): 125972059
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Entry
125972059 CDS
T08785
Symbol
her6
Name
(RefSeq) hairy-related 6 isoform X1
KO
K06054
hairy and enhancer of split 1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03460
Fanconi anemia pathway
sscv04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
125972059 (her6)
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
125972059 (her6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sscv03000
]
125972059 (her6)
03400 DNA repair and recombination proteins [BR:
sscv03400
]
125972059 (her6)
Transcription factors [BR:
sscv03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Hairy, Hairy/E(SPL)
125972059 (her6)
DNA repair and recombination proteins [BR:
sscv03400
]
Eukaryotic type
DSBR (double strand breaks repair)
FA (Fanconi anemia) pathway
FA core complex binding factors
125972059 (her6)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hairy_orange
HLH
Spectrin_1st_PEPL
bHLH_NCOA
Motif
Other DBs
NCBI-GeneID:
125972059
NCBI-ProteinID:
XP_049581289
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All DBs
Position
10:7943221..7944850
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AA seq
274 aa
AA seq
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MPADMMEKSSSSPVAATPASMNSTPDKPKTASEHRKSSKPIMEKRRRARINESLGQLKTL
ILDALKKDSSRHSKLEKADILEMTVKHLRNLQRAQMTAVLNTDPTVLGKYRAGFSECMNE
VTRFLSTCEGVNTEVRTRLLGHLASCMTQINAMNYPSQHQIPPAAGPTHPSFGQPMVQMP
GSAPQVLPMSGVPCKGAPSPATLPNSDATKVYGGFQIVPATDGQFAFLIPNAAFAPNGPV
IPVYANSPGTPVPVPAAVSPAAPSGNTDSVWRPW
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgcctgccgacatgatggaaaaatcgtcctcgtctccggtcgctgccaccccagcaagc
atgaactcgacccccgataaacccaaaacagcctctgagcatagaaagtcttccaagcca
attatggagaagcggagaagagccaggatcaatgagagcttgggccagcttaaaactctc
atcttggacgcgctcaagaaagatagctccagacactccaaattggagaaagcagacatc
ctggagatgactgtgaaacatctccggaacctccagagagctcaaatgaccgcagtgctc
aataccgatcccaccgtgttaggaaagtatcgcgccggtttcagcgagtgcatgaacgaa
gtgactcgctttctgtccacctgcgagggcgtcaacacggaggtccgaacgcggctcctc
ggccacctcgccagctgcatgacgcagataaatgccatgaactaccccagtcagcaccag
atccccccggcggccgggccaacgcacccctcgtttggccagcccatggtgcagatgcct
gggtctgccccgcaggtgctacccatgagcggagtgccttgtaaaggagctccctctccg
gccactttacccaactcggacgccaccaaagtgtacggcggcttccagattgtgcctgca
acggacggacagtttgccttcctcatacccaacgcggcgtttgccccgaacggtcccgtc
attcccgtctacgccaacagccccgggacgccggttccggtgccggctgccgtctccccc
gcagccccatcgggaaacacggactcggtgtggcgaccatggtga
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