Syngnathus scovelli (Gulf pipefish): 125972070
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Entry
125972070 CDS
T08785
Symbol
exosc5
Name
(RefSeq) exosome complex component RRP46
KO
K12590
exosome complex component RRP46
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125972070 (exosc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125972070 (exosc5)
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
125972070 (exosc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
125972070
NCBI-ProteinID:
XP_049581312
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All DBs
Position
7:3676011..3677456
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AA seq
218 aa
AA seq
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MECTPSAASLREFGCEQNLLSRPDGSASFTQGDTSVLAAVYGPAEVKVSKEIYDRATLEV
IIQPKVGIASVKERAQEQCVRESCEASLLMSLHPRSSLTLVLQELHNDGSLLSCFLNAGC
MAMMDAGLPMSCLFCSVTCAIHTDGSIITDPTAAQEAESRALITFAIGSKERQVMMTSTK
GSFSVQEMQQCIAISQAASEKIFSFYRESLRRRYSKSV
NT seq
657 nt
NT seq
+upstream
nt +downstream
nt
atggagtgcactccgtctgcagcatccctcagagaatttggctgcgagcaaaatttactc
tcacgtcctgacggatcggcgtctttcacacaaggtgacacaagtgtactggctgcagta
tacggaccagctgaagtcaaagtcagtaaggagatttatgaccgggcgacgttggaggtg
atcatccaacccaaagtgggaattgcaagcgtgaaggagcgagctcaggagcagtgtgtg
cgggaaagctgtgaggcatccctgcttatgtcccttcaccctcgctcgtccctcacgctc
gttttacaggagctccataacgatggctctctcttatcctgcttcttgaatgctggctgc
atggctatgatggacgccggtttgccaatgagctgcctgttctgcagcgtcacttgcgcc
atccacacggacggaagcatcatcaccgatccgaccgctgctcaggaagcggagagtcga
gctctaataacctttgccatcggcagcaaagagcgccaagtgatgatgacctcaaccaaa
ggatcgttttcagtgcaagaaatgcagcagtgcatcgccatcagtcaggcggcgtctgag
aagatcttcagcttctacagagaatccctcagacggcgctactccaaaagcgtctga
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