Syngnathus scovelli (Gulf pipefish): 125972162
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Entry
125972162 CDS
T08785
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit isoform X1
KO
K07466
replication factor A1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03030
DNA replication
sscv03420
Nucleotide excision repair
sscv03430
Mismatch repair
sscv03440
Homologous recombination
sscv03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
125972162 (rpa1)
03420 Nucleotide excision repair
125972162 (rpa1)
03430 Mismatch repair
125972162 (rpa1)
03440 Homologous recombination
125972162 (rpa1)
03460 Fanconi anemia pathway
125972162 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sscv03000
]
125972162 (rpa1)
03032 DNA replication proteins [BR:
sscv03032
]
125972162 (rpa1)
03400 DNA repair and recombination proteins [BR:
sscv03400
]
125972162 (rpa1)
Transcription factors [BR:
sscv03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
125972162 (rpa1)
DNA replication proteins [BR:
sscv03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
125972162 (rpa1)
DNA repair and recombination proteins [BR:
sscv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
125972162 (rpa1)
MMR (mismatch excision repair)
125972162 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
125972162 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
CDC24_OB3
OB_MEIOB_N
Pox_vIL-18BP
Motif
Other DBs
NCBI-GeneID:
125972162
NCBI-ProteinID:
XP_049581525
LinkDB
All DBs
Position
7:complement(3119290..3131629)
Genome browser
AA seq
611 aa
AA seq
DB search
MIKLTEGAIEALASGNGGNDAVLQLVSIRKIEGGNGPPRFRVMMSDGRHTMSSFMLCTQL
NRLAQDNQLAPNCIVLLKRHVTNILKDDRRVVIILELEILKSAADVNCKIGNPMPYSDGH
TKAPQQAPASAAPVSRPPLQAQIGNDPPSSASSLPPVNRAGGKDFGKKPVASGTPGGPAK
VVPIASLNPYLSKWTIRVRVTNKSSIRTWSNSRGDGKLFSMEIVDETGEIRVTGFNQEVD
KFFDLVEVGKVYYMSKGSLKVANKQYTSVKNDYEITLNGDTSIIPCEDNCDVPVIQCEFI
SIGDLEKKEKDSVVDVIGVCKSVDEVTRLTTKTNREVSKRTLNLMDTSGKMVNVTLWGEE
AEKFDGSSQPVVAIKSAKLSDFGGVSLSVSFNSSMMINPDIPEAYKLRGWFDKEGHSMEG
HSLTESRGSGGMANSNWKTLSDVKSEHLGHGEKADYFTCVGTIVYMRKESCLYQACPSQE
CNKKVVDQQNGMYRCEKCDKEFPNFKYRLILAANIADYSDNQWVTCFQESAEAILGQNAA
YLGQLKDSNEAAFDEVFQQANFNTFVFRTRVKLETYNDESRIKATAMDVKPVDHKEYCKR
LIMNIRKMATN
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgataaaattgacagaaggagcaatagaggccttggccagtggaaatggtggaaacgac
gcagtgcttcagttggtgagcatccgtaagattgagggtggaaacggcccacctcgcttt
cgcgtgatgatgagcgatggccgacacaccatgtcctcgttcatgctttgcacgcaactc
aaccgcttggcccaagacaaccagctggcccccaactgcattgttcttctcaagagacac
gtgaccaatattctcaaggatgatcgccgtgtggtaatcatattggagctcgagatcctc
aagtccgctgcagatgtcaactgcaaaatcggcaacccgatgccctacagcgacggacac
acgaaagccccccagcaggccccggcctcggccgcccccgtcagccgtcctccacttcag
gcgcaaattggaaatgatccgccctcctccgcctcctccctccctccagtgaaccgagcg
ggcggcaaagatttcgggaagaagcccgtcgcgtccggcacgccgggcggccccgccaaa
gtcgtgcccatcgccagcctcaacccgtacctgtccaaatggaccatccgcgtccgcgtc
accaacaagagcagcatccgcacgtggagcaactcgcgcggcgacggcaaactcttctcc
atggagatcgtggacgagaccggagagataagggtgacaggcttcaaccaagaagtcgac
aagttctttgacctcgtcgaggtcggcaaggtctactacatgtccaaaggctctctgaag
gtggccaacaagcagtacacctcggtgaagaacgattacgagatcacgttgaacggcgac
acctccatcatcccgtgcgaggacaactgcgacgtccccgtcatacagtgcgaattcatc
tccatcggcgatctggagaagaaggagaaggattctgttgtggacgtgatcggcgtgtgt
aagagcgtggacgaggtgacccgtctcaccacaaagaccaaccgggaagtgtccaagcgg
acgctcaacctgatggacacgtcgggcaagatggtgaacgtcaccttgtggggcgaagag
gcggagaagtttgacggcagctcccagcctgtggtggccatcaagagcgccaagctgtcc
gactttggcggcgtctcgctttccgtgtccttcaacagcagcatgatgatcaacccggac
atccccgaggcctacaagctgcgaggctggtttgacaaggaaggccacagcatggaagga
cactctctgaccgagtccagaggcagcggcggcatggcaaactccaactggaagaccttg
tctgacgtgaagtcggagcacctgggacatggagagaaggccgactatttcacctgcgtc
ggcaccatcgtgtacatgcgcaaagagtcgtgcctctatcaggcgtgcccgagccaagag
tgcaacaagaaggtggtggaccagcagaacggcatgtaccgctgcgagaagtgcgacaaa
gaattccccaacttcaagtaccgcctcatcctagcagccaatattgcagattacagcgac
aaccagtgggtgacctgcttccaggagagcgccgaggccattttgggccaaaacgcagca
tacctgggacagctcaaggactccaatgaagccgcctttgacgaggtcttccagcaagcc
aacttcaacacgtttgtgttccgcaccagagtcaagctggaaacgtataacgacgagtcc
aggatcaaggcgacggcgatggacgtgaagcccgtggaccacaaagaatactgcaaaagg
ttgatcatgaacatcaggaaaatggccaccaattag
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