Syngnathus scovelli (Gulf pipefish): 125972260
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Entry
125972260 CDS
T08785
Name
(RefSeq) LOW QUALITY PROTEIN: actin-related protein 2/3 complex subunit 1B-B-like
KO
K05757
actin related protein 2/3 complex, subunit 1A/1B
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04144
Endocytosis
sscv04517
IgSF CAM signaling
sscv04519
Cadherin signaling
sscv04530
Tight junction
sscv04810
Regulation of actin cytoskeleton
sscv05100
Bacterial invasion of epithelial cells
sscv05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
125972260
04519 Cadherin signaling
125972260
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
125972260
09144 Cellular community - eukaryotes
04530 Tight junction
125972260
09142 Cell motility
04810 Regulation of actin cytoskeleton
125972260
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
125972260
05100 Bacterial invasion of epithelial cells
125972260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sscv04131
]
125972260
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
sscv04812
]
125972260
Membrane trafficking [BR:
sscv04131
]
Others
Actin-binding proteins
Arp2/3 complex
125972260
Cytoskeleton proteins [BR:
sscv04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Arp2/3 complex
125972260
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_EML_2
Beta-prop_IFT122_1st
Beta-prop_THOC3
WD40
WD40_WDHD1_1st
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40_CDC20-Fz
WD40_Prp19
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR19_1st
Beta-prop_Aladin
WDR55
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
EIF3I
Beta-prop_EML
Beta-prop_TEP1_2nd
WD40_Gbeta
eIF2A
Beta-prop_WDR35_TULP_N
Beta-prop_HPS5
Beta-prop_WDR90_POC16_2nd
WDR90_beta-prop_4th
PEP5_VPS11_N
Tricorn_2nd
WD40_MABP1-WDR62_2nd
SH3_3
Motif
Other DBs
NCBI-GeneID:
125972260
NCBI-ProteinID:
XP_049581849
LinkDB
All DBs
Position
7:16717460..16721414
Genome browser
AA seq
379 aa
AA seq
DB search
MAFHSFLLVPISCHAWNKDGTQLAICPNNHEVHIYKKDGTKWSKIHELKEHNGQVTGVDW
APDSNRIVTCGADRNAYVWTXWKPTLVILRINRAARCVKWSPRENKFAVGSGSRLISICY
FEQENDWWVCKHIKKPIRSTILSLDWHPNNVLLAAGSCDFKCRVFSAYIKEVEEKPSPTP
WGSKMPFGEMLFESGGSAADGPGAGAAGSGGGWVHSVCFSDSGNRLAWTSHDSTVSVAEG
GKSSTVSSLRSDTLPLLCVTFITESSLVAAGHDCCPMLFVLDAAKGGLAFGGKLDVPKQA
AQKGISARERFQNLDRRASETPSTDRDLSTLHKNSISHISVLQGGRKQCAKFYTTGMDGG
LCIWDVKTLESSMKNLKIV
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atggccttccatagcttcctgctggtaccaattagctgccacgcctggaacaaagacgga
acccaactggccatctgccccaacaaccacgaggtccacatctacaagaaggacgggacc
aagtggagcaagattcacgagctcaaagagcacaacggccaagtgacaggtgtggactgg
gcgcccgacagcaaccgcatcgtgacgtgcggcgccgaccgcaatgcctacgtgtggact
nnctggaagcccaccctggtcatcctgcgcatcaaccgggcggcgcgctgcgtcaagtgg
tcgccgcgcgagaacaagtttgccgtgggaagcggctcgcgactaatctccatctgctac
tttgagcaggagaacgactggtgggtgtgcaagcacatcaagaagcccatccgctccacc
atcctcagtctggactggcaccccaacaacgtgctgctggccgccggctcgtgtgacttc
aagtgcagggtgttctcggcctacatcaaggaggtggaggagaagccgagccccacgccc
tggggcagcaagatgcccttcggcgagatgctgtttgagtccgggggctccgcagccgac
ggtcccggcgcaggggcggcaggcagcggcggcggctgggtgcacagcgtctgcttctcc
gactcgggcaaccgcctggcctggacatcgcacgactccaccgtgtcggtcgcagagggc
ggcaagagcagcaccgtgagcagcctgaggtccgacacgctccctcttctgtgcgtcacc
ttcatcaccgagagcagcttagtcgccgccggccacgactgctgccccatgctctttgtg
ttggacgccgccaaaggaggcctggcgttcggaggcaaactggacgtccccaagcaggcg
gcccaaaaggggatcagcgccagggagcgcttccagaacctggaccgccgtgcctcggag
accccgagcaccgacagagacctgagcacgctgcacaagaacagcatcagtcatatctca
gtgctgcaaggaggacggaagcagtgcgccaagttctacaccactggcatggatggaggc
ttgtgcatctgggatgtcaagactctggagtcatctatgaagaacctgaagattgtgtga
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