Syngnathus scovelli (Gulf pipefish): 125972339 Help Entry 125972339         CDS       T08785                                  Symbol col4a3 Name (RefSeq) collagen alpha-5(IV) chain   KO K06237   collagen type IV alpha Organism sscv  Syngnathus scovelli (Gulf pipefish) Pathway sscv04382   Cornified envelope formation sscv04510   Focal adhesion sscv04512   ECM-receptor interaction sscv04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:sscv00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     125972339 (col4a3)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     125972339 (col4a3)   09142 Cell motility    04820 Cytoskeleton in muscle cells     125972339 (col4a3)  09150 Organismal Systems   09158 Development and regeneration    04382 Cornified envelope formation     125972339 (col4a3)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:sscv04147]     125972339 (col4a3)    00536 Glycosaminoglycan binding proteins [BR:sscv00536]     125972339 (col4a3) Exosome [BR:sscv04147]  Exosomal proteins   Exosomal proteins of other cancer cells    125972339 (col4a3) Glycosaminoglycan binding proteins [BR:sscv00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    125972339 (col4a3) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen C4 Motif Other DBs NCBI-GeneID:  125972339 NCBI-ProteinID:  XP_049581922 LinkDB All DBs Position 7:complement(100222..116879) Genome browser AA seq 1666 aa AA seqDB search MLVVSVTRGRALLEPLLQMMLMLMLLTTSSACECSRKWPCHCEGVKGQKGEAGYRGYDGL PGLIGYPGNEGGQGPDGLEGQRGSAGHPGLKGSRGVPGPSGFPGPPGLPGLPGSEGSAGQ TGLPGCNGTKGSDGLPGFPGLPGLVGLPGRPGPPGEKGDSPFFPYSAEIKGAQGPRGLDG DKGLSGELGPPGFPGPSGPAGLSGRPGSPGSPGEKGQEGPSPVSPGPQGLKGRRGPVGIP GPKGSKLYVEGPKELKGEPGDVGPKGCAGLPGPAGRSGTKGEQGQRGEPGSPGKAGKDGL PGELGQTGEPGPRGFVGPPGIDGGQGEKGDFGPPGLPGEISWNYAFVKGRKGTAGLPGST GAPGEPGLVGFPGPQGEQGVGPTGQPGPPGPPGFMGPKGEKGQNGPVVIGPPGPPGVPGS SGPMGEPGEPGIPDFLPGAIGPPGTKGRKGLTGPPGTRGREGPEGEKGVLCLVCPVVVGA SGPPGQPGEPGADGLRGELGAPGSKGERGLKGMAGAPGPRGLFGIQGPPGSPGLTGDPGT MRRYGQKGEVGKPGDVGAPGLEGRDGLPGMGGPKGSPGPKGNPGQGLKGFRGPVGVTGPR GPPGQMGPLGPPGIGAPGPPGPPGTVGVLGQSGDPGKPGEKGSPGKIISSPGDPGQKGAK GSSGNPGSEGVMGPPGILGSGGLKGERGQRGFTVQGPQGFPGVKGSKGLAGAPGVPSYGS KGRSGPSGPPGKHGSKGDAGFGFPGQQGQLGPQGEQGSVGAPGSQGPQGSVGLPGYAGQV GAPGPKGFRGLDGFPGPPGPVGSCSPGALGPVGQQGPIGVIGFSGGRGFKGEKGGPGLPG MGAIGPQGPFGVPGFDGTPGPQGSTGMKGQTGSPGQPGRPGVTGDFGPPGPRGSPGNLGR PGEPGIPGPKGEEGVNGTAGFQGPHGPQGARGETGPKGMQTTVQMFGDPGDLGEPGPLGL TGAKGSQGSLGPPGLDGTNGKPGRAGPQGPRGEAGRDGETGPPGSCGLLGNSGELGKPGC KGEKGSAGPCGEPGLVGNEGPGGLKGVKGEPSLPGPGPKGYPGEKGQPGCAGPTGLKGVL GDRGNFGPPGDRGPCGPKGNAGPPGCRGPPGSPGEKACDGPPGVNGPPGPSGLTGNKGPP GNPGPSGPRGSQGQDGIPGPAGEKGAMGEPGIGARGAEGTKGPPGCVGEKGAPGTCGHPG PSGPAGNPGCPGPPGFPGPPGLHGRPGPCTEGEKGGKGLPGERGPRGPPGCRGPPGPPGS GLKGEKGSKGETGGTGSPGCHGEPGPPGMPGPDGAQGAPGRKGYMGLTGATGPVGTKGDD GPAGIKGSPGPAGPRGRQGQRGKDVSREVLVSAGDQGLPGDPGPPGQPGITGMPGGTGAP GPKGGRGLTGPTGGGGLTGQKGDTGDRGEPGKKGVTGPPGPAGAKGPRGPPGSCVDTPEK DGFLFSRHSQSTAVPECPSGSVQVYSGFSLLFINGNNRAHGQDLGALGSCLPRFTTMPFL FCNTDSTCRYAARNDYSYWLSTDQSGVSAMPFISGPLLKNYISRCAVCESATNVMTVHSQ TRLLPDCPLGWDSLWSGFSFVMETGVGAEGSGQPLSSPGSCLESFRKIPFIECHGRGTCN FYTDSYSYWLAALDPRHMFSKPEPRTEAGDLPENLISRCRVCSKRP NT seq 5001 nt NT seq  +upstreamnt  +downstreamnt atgctggttgtgtctgtcacgcgggggcgcgccctcctagagccgctgctgcagatgatg ctgatgctgatgctcctcaccaccagctcggcgtgcgagtgcagcaggaagtggccgtgt cattgcgagggggtcaaaggtcagaagggagaggccggttaccggggatacgacggcctt cctggactcatcggttaccctggcaacgagggcggccaaggaccggacggactggagggt cagcggggctcggcgggacacccgggactcaaaggctctcggggtgttccaggcccttcg ggttttcccggccctcctggccttccgggacttccaggcagcgaaggctcagcgggccaa acgggactcccaggatgcaacggcaccaagggttcggacggcctccccggcttccccgga ctcccaggactggtcggcctgcccggtcgcccgggaccgccaggagaaaagggagactcg ccattctttccatattccgctgagattaaaggcgcacaaggaccacgaggactagatgga gacaagggattgagcggagagctgggccctccgggcttcccgggaccttctggacctgct ggactttctggacgtccggggtcgccggggtcgccgggagagaagggtcaagagggtccc agtccagtcagcccaggtccacaagggctgaagggacgtcgcggacctgtcggtatcccg ggcccgaaaggaagcaaattgtatgtggaggggcccaaagaactgaagggcgaacccggt gatgttggacccaaaggttgcgctggacttcctggtccagcgggaagatcggggactaaa ggcgagcaaggccagcgaggggagccgggctcaccgggaaaagcaggaaaggacggcctc cctggagaactggggcaaacgggagaaccggggcctcggggctttgtgggtcccccgggc atcgatggaggacagggcgagaaaggcgactttggtcctcctggtcttccgggcgagata tcctggaattacgcatttgtgaaagggcgcaaagggactgccgggcttcctggatcaaca ggagcacctggagagccaggacttgtgggctttcccggaccccagggcgagcaaggggtg ggtccgactggtcagccgggccctccggggccaccgggcttcatgggacccaaaggagag aaagggcaaaatgggcctgtagtcattgggcctcctggacctccaggggtccccgggagt tctggacccatgggagaaccaggagagccaggaataccagacttcctgccaggcgccatc ggacctcctggcaccaaaggtcgtaaaggccttaccggacctcccgggaccagagggcgg gaaggcccggaaggtgagaagggggtgctctgcttggtctgtcctgttgttgtgggggcc tccggaccaccaggtcaaccgggggaaccaggtgcagatgggctgagaggagaacttggt gctccgggctccaaaggcgagagaggtctgaaaggtatggctggagcacctgggccacgg ggtctctttggtatccaaggaccgccaggatcgcctggtctcacaggtgatcccggcacc atgaggcggtatgggcagaaaggggaagttgggaaaccaggagacgttggagcgccgggc cttgagggccgagatggacttcctggaatgggaggaccaaaaggcagcccgggaccaaag gggaaccctggacaaggactcaaaggtttcaggggtcctgttggagtgactggtcccaga ggaccaccgggacaaatggggccgcttgggccgccaggcatcggggctcctggaccgcca ggaccaccagggactgtcggagttttgggccagtctggagatcccggtaaaccaggtgaa aaaggttctcctggtaaaatcataagcagcccgggagatcctggccagaaaggagcgaag ggatcgtctggcaatcctggatcagaaggggtgatgggacctcctggaattctgggatcg ggcggtctgaagggagaaagaggacaaagaggatttactgtccagggtcctcaaggattt ccaggagtcaaaggatccaaaggcctggcaggagctccaggtgttccaagttatggaagt aagggccgctcaggaccatcgggaccaccggggaaacatggctccaagggcgatgctggc tttggctttcctggccagcagggccaattgggtccccaaggagagcaaggctctgtagga gcaccggggtctcaagggccccaaggatctgttggactcccagggtacgcaggacaagtt ggagcaccaggtcccaaaggtttccggggcctggatgggtttcctggaccacctggcccc gttggatcttgctctccaggagcacttggacctgtgggacagcaggggccgataggagtc attggcttctcgggaggccggggtttcaagggtgagaaaggtggtcctgggcttccaggc atgggcgctattgggccgcagggaccgtttggcgtccccggatttgatggaactccaggt ccacagggaagcaccggtatgaaagggcagactgggagtcctggtcagccaggaaggcca ggtgttacgggagactttggtccccctggaccccgtggtagtccagggaaccttgggaga ccaggagagcctgggattcctgggccaaaaggtgaggagggtgtcaatggtactgccggc ttccaggggccacacgggcctcagggggctcgaggggagactggaccaaaaggaatgcag accactgtgcagatgttcggggatcctggagatctgggagagcctggacctctaggtctg actggtgctaaaggcagtcaaggttccctggggcccccgggtctcgatggcaccaatggc aaaccaggaagagctggacctcaaggaccccgtggggaagcaggtagagatggagagact ggtcctcctggttcatgcggtctcctcggaaactccggggaacttggaaaaccaggttgc aaaggtgaaaaaggttctgccgggccctgtggagaacccggtctcgttggaaatgaagga ccgggcggactgaaaggtgtaaaaggggaacccagtttaccgggacctggtcccaaagga tatcctggagaaaagggacagccaggttgtgcaggtcccacaggtctaaaaggagtgctc ggagacagaggaaactttggtcctccaggagatcgtggtccctgtggcccgaaaggaaat gctggaccacctggttgcagaggtcctccaggttctccaggtgagaaagcttgtgatgga cctccaggggtcaacggacctccaggacctagtggcctgacagggaacaagggcccccct ggaaatccgggtccatctggtcccagaggaagccagggacaagatggcataccaggacct gctggagagaagggagccatgggggaacctggaatcggagccaggggagcagaggggaca aaaggtccaccgggctgtgttggagaaaagggagctcctggtacttgcggtcatccaggg ccttctggtccggcaggaaatccaggttgccccggtccgcccggcttccctgggccccct ggtcttcatggtaggccgggaccctgcactgaaggagagaaaggaggaaagggactgcca ggagaacgggggccaagagggccacctgggtgtcgagggcctcccggccccccaggttct ggtcttaaaggagaaaagggctctaaaggggaaacaggcggcacgggcagccccggttgt cacggtgaacctggcccgccaggcatgccgggtccagacggagcgcagggagcacctgga cgcaaaggttacatggggcttaccggggctaccggacctgtcggcaccaagggtgacgac ggtccggctggcatcaaaggttctcctggacccgcaggaccgagggggagacaagggcag agggggaaggacgtgtccagagaggtgctggtctcagcaggagaccaaggcttgcctgga gatccgggaccgccaggacaaccggggatcacaggaatgccaggcggaaccggcgctcca gggccgaaaggtgggcgagggctcaccgggccgacaggggggggcggtttgacgggccag aaaggcgacaccggcgacaggggagagcccggaaaaaagggtgtgacgggcccgccggga cccgccggggcaaagggccctcggggccctccgggctcctgcgtggacactccggagaaa gatggcttcctgttcagccggcacagtcagagcaccgccgtaccggaatgcccgtcggga tctgtccaggtgtacagcggcttctctctgctcttcatcaacgggaacaaccgggctcac gggcaggacttgggagctctgggtagctgccttcctcgtttcaccaccatgcccttcctt ttctgtaacacggacagcacctgccgctacgctgcacgcaacgactactcctattggctc tccactgaccaatcaggagtcagcgccatgcccttcatctcgggaccgctcctgaagaat tacatcagccggtgtgcggtgtgcgagtcggctaccaacgtgatgactgtccacagtcag acacgtttgcttcccgactgtcctttgggttgggattctctgtggtccggattctccttc gtcatggaaacgggagtcggggcggagggttcgggtcagcccctgtcgtcgcccggatcg tgtctggagagctttcgtaagattcccttcatcgagtgtcacggcagagggacgtgcaac ttctacacggactcctactcgtactggctggccgcactggacccgcgtcacatgttcagc aaacccgagcctcgaaccgaagccggggacctgccggaaaatttgatcagtcgttgcaga gtttgctccaagcgcccgtga

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