Syngnathus scovelli (Gulf pipefish): 125972360
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Entry
125972360 CDS
T08785
Symbol
atg16l1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04136
Autophagy - other
sscv04140
Autophagy - animal
sscv04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
125972360 (atg16l1)
04136 Autophagy - other
125972360 (atg16l1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
125972360 (atg16l1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sscv04131
]
125972360 (atg16l1)
03029 Mitochondrial biogenesis [BR:
sscv03029
]
125972360 (atg16l1)
Membrane trafficking [BR:
sscv04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
125972360 (atg16l1)
Others
Specific organelles associated proteins
Auto phagosome
125972360 (atg16l1)
Mitochondrial biogenesis [BR:
sscv03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
125972360 (atg16l1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40
ATG16
Beta-prop_IFT122_1st
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
WDR55
WD40_Gbeta
EIF3I
Beta-prop_TEP1_2nd
DSE1_N
Beta-prop_WDR36-Utp21_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_SCAP
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_Aladin
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_WDR90_POC16_2nd
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_RIG_2nd
ANAPC4_WD40
NBCH_WD40
Beta-prop_VPS8
Beta-prop_IFT140_1st
Beta-prop_NWD2_C
CCDC93_CC
Tricorn_2nd
Beta-prop_ACSF4
Beta-prop_DCAF12
ADIP
KASH_CCD
CLIP1
CCDC146_CC_N
Motif
Other DBs
NCBI-GeneID:
125972360
NCBI-ProteinID:
XP_049581961
LinkDB
All DBs
Position
7:complement(187894..194272)
Genome browser
AA seq
607 aa
AA seq
DB search
MAQRRGACTWKRHICEQLKLRDRLQRHGFEELVHQYNRLLEKSDLRAVLSERYQADKYEV
ARGHDATAATDGGRGDALVLQQEMAVMRIRHQEELTELHKKRGELAQTVIELNNLIQQKD
KEIQSNEAKMLEYQQQTAALEGDCRDLNSRLQDLERANQTLKDEYDALQITFSALEEKLR
KTTEDNQELVSRWMAEKAQEANRLNAENEKDSRRRQAKLQKELADAAKEPLPVDPDDDIE
VLAEDAGKAGGEQPQGRTLGRTPSKKISQMPPGGLLDSISNIFGRRGANSLSTSPETSEV
PPGASVDVRVPSTALHVFEAHDGEVNAVRFGPGSRVLATGGMDRRVKLWEVVSGRCEPKG
ALTGSNAGITSIEFDSTGSYLLAASNDFASRIWTLDDYRLRHTLTGHSGKVLSARFLLDN
ARIVSGSYDRTLKLWDLRSKVCMKTVFAGSSCNDIVCTEQCVMSGHFDKKVRFWDIRAES
SVRELELLGRVTSLDLNQDRSELLTCSRDDLLKIVDLRANAVRQTLSAEGFKCGSDWTRV
TFSPDGNYAAGGSADGALYIWNVLTGKLDRTLERSHNSAINAVSWSPSGVYVSSVEKGSK
AILWSDM
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagcgacgcggcgcctgcacgtggaagcgacatatctgcgagcagctcaagctt
cgcgaccgtctgcagcggcacggcttcgaggagctcgtccatcagtacaatcgtctgctg
gagaagtcggatctgcgcgccgtcctgtcggagcgctaccaggcggacaagtacgaggtc
gcacgaggacacgatgccacggcggcgacggacgggggtcgcggcgacgcgctagtgctg
cagcaggagatggccgtcatgaggatccgccatcaggaggagctgacagagctgcacaag
aaacgaggagagctggcgcagaccgtcatcgagctcaacaacctgatccagcagaaggac
aaggagattcaaagcaatgaggccaagatgctggagtaccagcagcagacggccgccctg
gaaggagactgtcgagatctcaacagccgcctgcaggacctggagcgagccaaccaaact
ctgaaggacgagtacgacgccctgcagattaccttcagtgccctggaggagaaactgagg
aagaccacggaggacaaccaggagctggtttcgcgctggatggccgagaaggctcaggaa
gccaaccggctcaacgcggagaacgagaaggacagcagacggcgacaggccaaactgcag
aaggagctggcggatgccgccaaagaaccgctccccgtcgaccctgacgacgacattgaa
gttctggccgaggatgccggcaaggcgggaggcgagcagccgcaagggcgaacgctcggc
cgaactcccagcaagaaaatctcccagatgccccctggtggtctgctggactccatctcc
aacatcttcgggcggcgaggcgcaaactccttgagtacgtctccggaaaccagcgaagtg
ccgccgggggccagcgtggacgttcgagtcccgtccacagcgctgcatgttttcgaagcg
cacgacggcgaggtgaacgccgtgcgctttggccccggctcgcgggtcttggcaacggga
ggcatggaccgcagggtgaagctgtgggaggtggtgtcaggtcgctgtgagcccaaagga
gcgttgaccggcagcaacgctggaatcaccagcatcgaatttgacagcacaggatcctac
ctgttggctgcttccaatgactttgccagtcgcatctggactctggatgactacagactg
aggcacacactgaccggacacagcgggaaggttctgtcggctcgcttcctgctggacaac
gctcgcatcgtgtcgggaagctacgaccgaaccctgaagctgtgggacctccgcagcaaa
gtctgcatgaagacggtgttcgccggctccagctgcaatgatatcgtgtgcaccgagcag
tgcgtgatgagcggacactttgataagaaggtccgcttctgggacatcagggcggagagc
agcgtgcgggagctggagcttctgggccgggtgacatctttggacctgaaccaggaccgc
agcgagctgctcacctgctccagagacgacctgctcaagatcgtggatctgcgcgccaac
gccgtcaggcagactctcagcgccgagggcttcaagtgcggttccgactggacccgagtg
actttcagccccgacggaaactatgcggccggcggctcggcggacggcgcgctgtacatc
tggaatgttctgaccgggaagttggacagaacactggagcgcagtcacaactcggccatc
aacgccgtgtcgtggtcgccgtcaggcgtgtacgtgagcagcgtggagaagggcagcaag
gccatcctgtggtccgacatgtga
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integrated database retrieval system
